Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggattgtggttgtagtggttcatgcatacagtacatattactggataagaggacatagattatgtatcactatgttatattttcctttgatgcagaacagCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCAC

Basic information

species Zea mays
transcript GRMZM5G831584_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831584_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g64262.1 (Oryza sativa), 3'ss of exon 2
--ggattgtggttgtagtggttcatgcatacagtacatattactggataagaggacatagat--tatgtatcactatgttatat-tttcctttgatgcagaacagCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCAC
   || |||    ||||||||  ||    |     |   |   ||  | | | || | ||    ||||| ||||| |||||||  |||  ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||     
ttcgagtgtaaaagtagtggtatatttgcaattctcccttgtttgattcataagagaaaggacatatgtttcactgtgttatacgtttgttttgatgcagAACAGCTTTGGGTGCTTGATTCTGTTCCTGGTCAAGTAGAAACAGATAACAGTGATGGTGAAGTTGAACGGGTTTTGCAAACGCTGGCAAGTCTTCCTTC-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29545082|gb|CB605260.1|CB605260
EST:     AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAG                         CTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGAT
genomic: AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAGgtgagaggag ... tgcagaacagCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGAT
EST: gi|29577114|gb|CB617226.1|CB617226
EST:     AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAG                         CTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGAT
genomic: AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAGgtgagaggag ... tgcagaacagCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGAT
EST: gi|74241544|gb|DT649458.1|DT649458
EST:     AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAG                         CTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGAT
genomic: AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAGgtgagaggag ... tgcagaacagCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaggacatagattatgtatcactatgttatattttcctttgatgcagaacagCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTCTTCAC
                                       ctttgat  putative branch site (score: 5)
                       actatgttatatttt  TA-rich tract