Sequence
atgc intronic sequence ATGC exonic sequence...ctgtgggattgtggttgtagtggttcatgcatacagtacatattactggataagaggacatagattatgtatcactatgttatattttcctttgatgcagAACAGCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G831584_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g64262.1 (Oryza sativa), 3'ss of exon 2
ctgtgggattgtggttgtagtggttcatgcatacagtacatattactggataagaggacatagat--tatgtatcactatgttatat-tttcctttgatgcagAACAGCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTC
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---ttcgagtgtaaaagtagtggtatatttgcaattctcccttgtttgattcataagagaaaggacatatgtttcactgtgttatacgtttgttttgatgcagAACAGCTTTGGGTGCTTGATTCTGTTCCTGGTCAAGTAGAAACAGATAACAGTGATGGTGAAGTTGAACGGGTTTTGCAAACGCTGGCAAGTCTTCCTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211176759|gb|FL088435.1|FL088435EST: AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAG --C---TCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACA
genomic: AGAGCTGCTCTCGCGGTGTGTATGGAGATTCTGCTAATCTTCCCAAACAGgtgagaggag ... tttgatgcagAACAGCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggataagaggacatagattatgtatcactatgttatattttcctttgatgcagAACAGCTCTGGGTCCTTGATTCTGTCCCTGGACAAGTAGAAACAGAGAACAGTGATGGTGAAGTTGAACAGGTTTTGCAAACGCTAGCGAGTCTTCCTTC
ctttgat putative branch site (score: 5)
ttatattttccttt CT-rich tract
actatgttatatttt TA-rich tract