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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgccgccacgcacccccgtcatctctcctctcgacacggcacagctccacgtccgtctcgtttaactgaatgcctaaacacgcatcgcagGTCCCAGGGAGGTGTTCATGTGCGGGATCGCGCAGTACGTGAACCTGTGGGGCACCATGGTTGGGTACACCATCACGGCGACCATAAGCATGGCGTAAGT

Basic information

species Zea mays
transcript GRMZM5G830545_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G830545_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g65660.1 (Oryza sativa), 3'ss of exon 2
gtacgcgccgccacgcacccccgtcatctctcctctcgacacggcacagctccacgtccgtctcgtttaactgaatgcctaaacacgcatcgcagGTCCCAGGGAGGTGTTCATGTGCGGGATCGCGCAGTACGTGAACCTGTGGGGCACCATGGTTGGGTACACCATCACGGCGACCATAAGCATGGCGTAAGT
            | | || | |  ||| | |  ||||    |  ||      |  ||  ||     | |||  |||||| ||| |    |  ||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||| || |||||||||||||       
----------gtaagtacactca-cattttttttctctcatctccat-----cttgttggttaaactgaacgcaatgccaaaa-atatttt-cagGTCCTAGAGAGGTGTTCATGTGCGGAATCGCGCAGTACGTCAACCTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGT------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acggcacagctccacgtccgtctcgtttaactgaatgcctaaacacgcatcgcagGTCCCAGGGAGGTGTTCATGTGCGGGATCGCGCAGTACGTGAACCTGTGGGGCACCATGGTTGGGTACACCATCACGGCGACCATAAGCATGGCGTAAGT
                                    gcctaaa  putative branch site (score: 3)
                         tttaact  TA-rich tract