1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagaacggcgtgactgtagctttcgtacattcccattttcaccgtaaaagcgcagaatggccatcgatttgaattgaactttttcgtctcaactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACGCTGAAACGGCTGTTGGAGTGGGCACCGTCGGCTCGTCCGAGGCCATCA
species | Zea mays |
transcript | GRMZM5G826838_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|67023766|gb|CO452515.1|CO452515
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: TGGACGATTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|40334727|gb|CK368797.1|CK368797
genomic: TGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCCCCTCTCGGGGACEST: gi|148968146|gb|EE019432.2|EE019432
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|148930328|gb|EE284735.2|EE284735
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|148943210|gb|EC888270.2|EC888270
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|148939265|gb|EC883753.2|EC883753
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|74245767|gb|DT653681.1|DT653681
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|71436843|gb|DR817893.1|DR817893
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|50338197|gb|CO533323.1|CO533323
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|78120426|gb|DV538810.1|DV538810
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACEST: gi|71436844|gb|DR817894.1|DR817894
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAG AACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgc ... aactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGAC
aaaagcgcagaatggccatcgatttgaattgaactttttcgtctcaactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACGCTGAAACGGCTGTTGGAGTGGGCACCGTCGGCTCGTCCGAGGCCATCA
atttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaacggcgtgactgtagctttcgtacattcccattttcaccgtaaaagcgcagaatggccatcgatttgaattgaactttttcgtctcaactgcgcagAACCGGTGCGTGAACATGATCGCGCATCTCTTCAATGCTCCTCTCGGGGACGCTGAAACGGCTGTTGGAGTGGGCACCGTCGGCTCGTCCGAGGCCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - -ctgtagc
- - - - - - - - - - - - - -cattccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattg