Sequence
atgc intronic sequence ATGC exonic sequence...attcttcccactaatatgtgatgtcaatattagtatcatggaatatactatttattgcgccatacgtatgtttttttattggtctgacatttattttcagCTGTTTCACCACTGAGATTCTCGATGGATTTGATGTTCAGAGAACTACTGGGTTTGCCGATACCCAGAAGAGATATGTTGATCTTACACGTTCGGTAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G822970_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g71960.1 (Oryza sativa), 3'ss of exon 13
---------------------------------------------attcttccc----actaatatgtgatgtcaatattagtatcatggaatatactatttattgcgccat-acgtatgtttttttattggtctgacatttattttcagCTGTTTCACCACTGAGATTCTCGATGGATTTGATGTTCAGAGAACTACTGGGTTTGCCGATACCCAGAAGAGATATGTTGATCTTACACGTTCGGTAATA
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gtatgtactctgcagcagctttttcttgttgatttctcttcttttaccctcccttaaaagtagtttgtattgtatagatttgtcagtcaatgaattggatttttggctgcatgacatatgaccttgtaaccgctggccttatatatgcagCTGCTTCACCACTGAAATTCTTGAAGGATTTGATGTCCAGAGAACCCCTGGGTATGCTGAGACTGTAAGGACATATGGCAACCTTACTCATTCAATAACC
upper sequence: GRMZM5G822970_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G20970.1 (Glycine max), 3'ss of exon 12
-attcttcccactaatatgtgatgtcaatattagtatcatggaatatactatttattgcgcca--tacgtatgtttttttattggtctgacatttattttcagCTGTTTCACCACTGAGATTCTCGATGGATTTGATGTTCAGAGAACTACTGGGTTTGCCGATACCCAGAAGAGATATGTTGATCTTACACGTTCGGTAATA
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gatttttcgtgagtgaagtttatttaaattgtttgcctatatatctaaaaactcaaaacattaaccccgtttacgatgtttttaatccca-acttgt--acagTTGTTTTACAACTGAGATTCTGGAGGGATTTGATGTTCAGAGAACAAGTGGCTTAGGTGATACTCTAAGGAAGTATGGTTATCTTACCCAAGCAATTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactatttattgcgccatacgtatgtttttttattggtctgacatttattttcagCTGTTTCACCACTGAGATTCTCGATGGATTTGATGTTCAGAGAACTACTGGGTTTGCCGATACCCAGAAGAGATATGTTGATCTTACACGTTCGGTAATA
gtctgac putative branch site (score: 3)
tttattttc CT-rich tract
tatgtttttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcttcccactaatatgtgatgtcaatattagtatcatggaatatactatttattgcgccatacgtatgtttttttattggtctgacatttattttcagCTGTTTCACCACTGAGATTCTCGATGGATTTGATGTTCAGAGAACTACTGGGTTTGCCGATACCCAGAAGAGATATGTTGATCTTACACGTTCGGTAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA