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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG

Basic information

species Zea mays
transcript GRMZM5G822591_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 25
gttagcatctgaatgaaaatttatttcct-tagc-gcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
                   ||| |||| | | || |  | ||  || |         |||       ||    | ||| | |||  ||| |  ||  | |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||
------------------gtttgtttcttatggcagggccttctattggtctatcagttttg---ctctgtttcaaaattttgaactgtttaattattatttgtacagGCTGGTCAGTTGCATCTTGTGAAACCATACATGGTTGCAGTTCAGAGCAACAATGTCTCTGCTGTGAATGAAGCTTTGAATGAGCTTTATGTTGAAGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 25
gttagcatctgaatgaaaatttatttcct-tagc-gcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
                   ||| |||| | | || |  | ||  || |         |||       |     | ||| | |||  | | |  ||  |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||| || ||||||||||||||||
------------------gtttgtttcttatggcagggccttctattggtctatcagttttg---ctccgtttcaaaattttgaactatttcattattctttgtacagGCTGGTCAGTTGCATCTTGTGAAACCATACATGGTTGCAGTTCAGAGCAACAATGTCTCTGCTGTGAATGAATCTTTGAATGAGCTTTATGTTGAAGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 25
------------gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgtt---ttcaaattccttcccccaa-aatctgacttgtcttgttg-ctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
              || | | |     ||    ||     | |      |||||  |||   | || |   || |||| |  | |   || ||| |   ||||    | |  | |||   |||||||| ||  |     | || || || || |||||||||||||| || |||||||| |||||||| ||||| || ||||| ||| |||||| ||| || |
gtctgcaattttcataccctattgtcaaatgcctacggtttcaatcttatttggtgagataacttgctggctttaaatgctattcagtaataatattgtttgttgcttggattttttattcagGCTGGCCACCTCAGATTAGTTAAGCCGTACATGGTTGCAGTTCAAAGCAACAATGTGTCTGCTGTCAATGAGGCTTTGAATGAAATTTATGCTGAGGAAG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 25
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
              | |   | |||    | |   |  ||  ||   |     ||| |   || || |  | | || |  ||    ||   ||  | |    | ||||||||||  | | |||||||||||||||||||||||||||||| || ||||| || |||||||| |||||||| ||||| ||  | |||||||| ||||
--------------gtaggatcatta--gtggtaaaaatttaattagatattagttgttgcatgccataactctaa-tgggaaacttcactttaatatgct-atagGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAACAACGTATCTGCTGTTAATGAAGCGTTGAATGAGATATATGTTGAGGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 24
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
  ||||||    |     |   ||||| |      | |||   |  |   ||||||||| | |||  ||    || || |  | |||  |||          | ||||||||||  | | |||||| || ||||| |||||||||||||||||||||||||| |||||||| ||||||||| | || ||| | |||||||| ||||
-gtagcattaatactgtcaacaatttcatc--ttaatttttactttataacctgttttccatttcactctatgaatattttccctgtgatgtatt-------atagGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGTAACAATGTGTCTGCTGTTAATGAAGCCCTTAATGAAATATATGTTGAGGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G06340.1 (Glycine max), 3'ss of exon 25
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
              | |   | | |   || ||  |  ||  ||   |   | ||| |   || || |  | | ||     | ||   ||| |   ||    | ||||||||||  | | |||||||||||| |||||| |||||||||| || |||||||| |||||||| |||||||| ||||| ||  | ||||| || ||||
--------------gtaggatgaata--ttggcaaaaatttcattagatatcagttgttgcatgccataacactaatgggaaatttcattgatatgct----atagGCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGCAACAATGTATCTGCTGTTAATGAAGCGTTGAATGAGATATATGTCGAGGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 23
--------gttagcatctgaatgaaaatttattt--ccttagcgcactttggatagaagcc----ctgttttcaaattccttcccccaaaatctgacttgt--cttgttgctctttggac---agGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
        ||     |||   |   ||| | ||     |||     |||| | |  |        ||||||  ||||   ||   | | | ||| | ||||  |||| |  | | |||     ||||||| ||  | |   | || || || ||  ||||||||||||| || || ||||| |||||||| |||||||| ||||| ||| |||||||||| ||||
gtctgtaggtctcattctattttctaatgtgttaagttttaatcttcttttggtgaagttaataactgtttgaaaatattttatgcaatattcttatttgttgcttgattttttctggtttttagGCTGGCCACATCCGATTGGTTAAGCCGTACTTGGTTGCAGTTCAAAGCAATAATGTGTCTGCTGTTAATGAAGCTTTGAATGAAATTTATGTTGAGGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 24
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
  ||||||    |     |   ||||| ||   |   ||    || ||  ||||||||| | |||  |       |||   | ||  | |||      ||  | ||||||||||  | | |||||| || || || ||||||||||||||||||||||| || |||||||| ||||||||| |||| ||| | |||||||| ||||
-gtagcattaatactgtcaacaatttcattttagtttttactttataa--cctgttttccatttcactgat---gaat---attttccctgtgatgtatt--atagGCTGGTCATCTCCGTCTTGTCAAGCCTTACATGGTTGCAGTTCAGAGTAACAACGTGTCTGCTGTTAATGAAGCCCTGAATGAAATATATGTTGAGGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 25
-----------gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgtt---ttcaaattccttcccccaa-aatctgacttgtcttgttgctctttgga---cagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
             || | | |     ||    ||     | |      |||||| |||     || |   ||||||| |  | |   || | | |   ||||    | | | |||      |||||||| ||  |     | || || || || |||||||||||||| || |||||||| || ||||| |||||||| ||||| ||| |||||||||| || |
gtctgcaatttcataccctattgccaaatggctacagtttcaatcttatttggagagataatttgctggtttcaaatgctattctgtaatagtattgtttgttgcttggattttttattttcagGCTGGCCACCTTAGATTAGTTAAGCCGTACATGGTTGCAGTTCAAAGCAACAATGTGTCCGCTGTCAATGAAGCTTTGAATGAAATTTATGTTGAGGAAG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 25
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
||||| | |||| |||  | ||  ||  |         ||  ||| || |          |  | | |  |  || |  ||  || |  || |          ||||||||||| |||| |||| | || ||||| ||| ||||||||||||| ||||||||||||||||| ||||| ||  |||| ||  | || || ||||| |
gttagaagctgactgatgactttgttttt---------ttctataaaaacaa-----ctgagctacattacttaacaattggtttcttctgatct--------cagGCTGGTCACTTGCGTCTTATCAAGCCATACATGATTGCAGTTCAGAGCAACAATGTCTCTGCTGTTAATGAGGCTCTGAATGAGATATACGTGGAAGAAG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 25
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
|||||   ||||      ||||| |   ||   |         ||  | |  ||  || | | ||  |  |  |  ||      | ||||||| ||  |    ||||||||||| ||||  ||| | || ||||||||||||||||||||||| || ||||| |||||||| ||||||||  |||| ||  | ||||  ||||| |
gttagaggctgaccattgatttaatattttc-tgttaaaaacttatcaccagtggcttaacaatctatatctgatgatt----atttcttgtttctgatct--cagGCTGGTCACTTGCGCCTTATTAAGCCATATATGGTTGCAGTTCAGAGCAATAATGTATCTGCTGTAAATGAAGCTCTGAATGAGATATATGCAGAAGAAG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 25
-------------gttagcatctg---aatgaaaatt--tatttccttagcgcactttggatagaagccct---gttttcaaattccttcccccaaaatctgacttgtcttgttgctctttgga---cagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
              |||   | |     ||| | |||  | | | |||     | |  | | | | |       ||||  ||||   ||   | |   | |    ||  |     ||||||||    |||||||||||  | ||||||||||| || ||||||||||| ||||||||||  |||||  |||| || |||||||| || || |   || |||| || ||||
gtctgcatgtttgcttactctttatgtgatggatattgctgtgtgcttcttttagtgggaacaaatgattaaaagtttaaaaatggttttgtcaatggtatcttatgcttatgatctctttgggtttcagGCTGGTCACCTTCATCTTGTGAAGCCCTATATGGTTGCTGTTCAGAGTACTAATGTGGCTGCGGTAAATGAAGCATTAAATGGTATTCATGTAGAGGAGG

upper sequence: GRMZM5G822591_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 25
--gttagcatctgaatgaaaatttatttccttagcgcacttt---ggatagaagccctgttttcaaattccttcc-----cccaaaatctgacttgtct---tgttgctctttgga---cagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
   || |  | ||   |    ||| |||||||    |   ||      ||     | ||||| |      ||||         |    ||   |||  |    |||  |  |||||   ||||| |||||  | ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |   |||||||||| ||||
gtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAACAATGTTTCTGCTGTGAATGAGGCTTTGAATGGGATTTATGTTGAGGAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29946608|gb|CB816235.1|CB816235
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|31352863|gb|CD437220.1|CD437220
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|28873822|gb|CB329759.1|CB329759
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGCCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|28930886|gb|CB334247.1|CB334247
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGCTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|116818665|gb|EC861713.1|EC861713
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|31664358|gb|CD573083.1|CD573083
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|67014450|gb|CO443199.1|CO443199
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|67016082|gb|CO444831.1|CO444831
EST:     TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAG                         GCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 656

TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 530

TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 641

TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 601

TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatct ... ctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG
                         atctgac  putative branch site (score: 601)
                                   tcttgttgctcttt  putative PPT
     ttcaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacagGCTGGTCAATTGCATCTTGTGAAACCATATATGGTTGCAGTTCAGAGTAACAATGTCTCTGCTGTGAATGAAGCCTTGAACGAACTTTATGTTGAAGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG