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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttggaatccctttgatattggcattcatcttttctttgttctgtaattcttgcctttttcttgtaaatagatttagactttaccttttttatgcagGAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAG

Basic information

species Zea mays
transcript GRMZM5G820727_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820727_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT4G25770.1 (Arabidopsis thaliana), 3'ss of exon 2
ttttttggaatccctttgatattggcattcatcttttctttgttctgtaattcttgcctttttcttgtaaatagatttagactttaccttttttatgcagGAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAG-------------
   |  |   | | |    ||| |  |||    ||||  ||  ||||||||| |    ||| | |  |    |   | | | |  |      | | ||||| ||  || | ||   ||| ||   |||||||||||||||||||  ||||||||||||             
--gtgcgtgtttcttgacctatagatattgtggttttgattactctgtaattttatgatttgtttgattttgatgatgaaattgga------tgaagcagGTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148942263|gb|EC887279.2|EC887279
EST:     CGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACC                         GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGT
genomic: CGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACCgtgagttacc ... ttttatgcagGAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGT
EST: gi|91872665|gb|EB402622.1|EB402622
EST:     CGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACC                         GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGG
genomic: CGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACCgtgagttacc ... ttttatgcagGAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaattcttgcctttttcttgtaaatagatttagactttaccttttttatgcagGAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAG
                                    ctttaccttttttat  CT-rich tract
             tttttcttgtaaatag  TA-rich tract