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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagcagctgcctttacaagttctgactccgaaactcgaatcattcgcaccaaagctccagcctttttcgcctgtgtgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCCAGCCTGATG

Basic information

species Zea mays
transcript GRMZM5G819035_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G819035_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
gtagagcagctgccttt-acaagttctgactccgaaactcgaatcattcgcaccaaagctccagccttt----ttcgcctgtgtgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCCAGCCTGATG
    | |  | |||||| ||||  ||    | | || |||||| | |||     |||| |||| |||||    || |  || | | |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| | |||||| |||||| |||||
--gtaccgaccgccttttacaacctccatattccaagctcgaagctttc-----aaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG

upper sequence: GRMZM5G819035_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g21160.1 (Oryza sativa), 3'ss of exon 1
gtagagcagctgcctttacaagttctg---actccgaaactcgaatcattcgcaccaaagctccag--cctttttcgcctgtgtgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCCAGCCTGATG---
   |  |  | |||||  |||  ||       ||   ||  |  |  |  |    ||||| ||||   | ||| | || || | | ||| |||||||| |||||||||   |||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||| | ||| ||||||||| |||||   
---gtactaccgccttcgcaacctccatgcgttctccaagccaga--aggcatttcaaagttccaaaacgtttcttgcttgcgcgtgtgaagAGCCGCCGCGGCCGCG---CTGATGCTCGCCGGCGGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGATTTCGCCAGCATGATGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactcgaatcattcgcaccaaagctccagcctttttcgcctgtgtgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCCAGCCTGATG
        aatcatt  TA-rich tract