1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcctttggactactgaatttactattttgctgtttaaagcttgtagttttcgaattatctcaaatcattgaaattttttgatttttttattactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGGAGCAGAGGTGGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACA
species | Zea mays |
transcript | GRMZM5G818887_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|61236719|gb|DN586461.1|DN586461
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|148960724|gb|EE011368.2|EE011368
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|76013821|gb|DT940991.1|DT940991
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|78091451|gb|DV519825.1|DV519825
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|67010369|gb|CO439118.1|CO439118
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|149045355|gb|EE047779.2|EE047779
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|86468327|gb|DY234697.1|DY234697
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCCCCCGTAGTG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|87156323|gb|DY401112.1|DY401112
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|71313249|gb|DR793148.1|DR793148
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|211324976|gb|FL012745.1|FL012745
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGGCCTGGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAEST: gi|76016277|gb|DT943447.1|DT943447
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTG-TTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCA
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGEST: gi|78113031|gb|DV531425.1|DV531425
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATG TGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCCGCCAATAAGCAGTTCCTCGTCACCCGTAATGgtatgctgct ... ttactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAG
agttttcgaattatctcaaatcattgaaattttttgatttttttattactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGGAGCAGAGGTGGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACA
ttttgat putative branch site (score: 4)
tttttttattactccc CT-rich tract
aattatctcaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctttggactactgaatttactattttgctgtttaaagcttgtagttttcgaattatctcaaatcattgaaattttttgatttttttattactcccagTGCCCTGTTTAAGACGTGCCATCTCGGTTGAGGAAGAGTATGATGCAGCAGGAGCAGAGGTGGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
tgccttt
- - - - - ctactga
- - - - - - - - - - - - - - tgctgtt