1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctcacaatggattgatgttgcttttgatgctactagttttgccccctttttgccttcatcaggcagttgaattatgttacttaaggacttgttctacagGATATTCAGAGCACGACAGAGTTGCAGTCACCAGTGCAAG
species | Zea mays |
transcript | GRMZM5G816784_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGAAGGATTCTCAG GATATTCAGAGCACGACAGAGTTGCAGTCACCAGTGCAAG
genomic: CTCCTACGACTAGTTCTTTTTATGTGTAACCTTCAATGAAGGATTCTCAGgtgaatttgc ... tgttctacagGATATTCAGAGCACGACAGAGTTGCAGTCACCAGTGCAAG
cctttttgccttcatcaggcagttgaattatgttacttaaggacttgttctacagGATATTCAGAGCACGACAGAGTTGCAGTCACCAGTGCAAG
cttgttct CT-rich tract
aattatgttacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcacaatggattgatgttgcttttgatgctactagttttgccccctttttgccttcatcaggcagttgaattatgttacttaaggacttgttctacagGATATTCAGAGCACGACAGAGTTGCAGTCACCAGTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
gctcaca
- - - - - - - - tgttgct
- - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact