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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgaagttgctggcttgattagttctgtttttttccttttctgcgttgtacctaacttgctctctttcttctcccttagGCAATACTTTGTAAACCCAGACGACACTGTCTGCCAGAAG

Basic information

species Zea mays
transcript GRMZM5G816636_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G816636_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 2
gtaagcttgaagttgctggcttgattagttctgtt--tttttccttttctgcgttgtac---------ctaacttgctctctttcttctccctt--agGCAATACTTTGTAAACCCAGACGACACTGTCTGCCAGAAG
|||||  ||||  |||    ||||||  |||  |   ||| |||||||| |||||   |          ||| |||          || |  ||  ||||||||||||||||||||||| ||||||||||||||||||
gtaagactgaacctgccaagttgattttttcaatccatttctccttttcggcgtttctcatgtgtgtgttaatttgactcgaaatatcccgtttgcagGCAATACTTTGTAAACCCAGATGACACTGTCTGCCAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttttttccttttctgcgttgtacctaacttgctctctttcttctcccttagGCAATACTTTGTAAACCCAGACGACACTGTCTGCCAGAAG
                         acctaac  putative branch site (score: 2)
                        tacctaacttgctctc  CT-rich tract
     ttttt  TA-rich tract