Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctcgttgtgcgtaacttgcacagatcgctgcctgataacttcttgcactctgggatttgtatttgacatctgaaacccgcgcttggtctctgatccggtgtcagttaggcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGGGAG

Basic information

species Zea mays
transcript GRMZM5G812553_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089860_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g03400.2 (Oryza sativa), 3'ss of exon 2
gtaagccctcgttgtgcgtaacttgcacagatcgctgcctgataacttcttgcactctgggatttgtatttgacatctgaaacccgcgcttggtctctgatccg-gtgtcagttaggcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGGGAG
||||| | |  | |     |  |  |  ||||| |||  |  || | || || ||   || |  || | |||   | ||| |||     ||||  || |||||   ||  | || || |      ||||      || |||||||    ||| ||||| |||  |||||||||||| ||||||||||| |||| ||| | | | ||||||||| |||| ||||||
gtaagactt--tcg-----atttctcttagatccctggatcgtagcatcctgaacc--ggaagctgcaattgctgtatgagacc-atatttgggatcagatccccatgctaatttgggg-----gctct------acggaatgttctgatttgttggtattgcgtgatcagATTTGTGAGTGCATCACCTCGGCCCCGTTCGACGCCATAGATATCACGAGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075654|gb|DV504088.1|DV504088
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|40334416|gb|CK368486.1|CK368486
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|50336722|gb|CO531848.1|CO531848
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71764065|gb|DR962002.1|DR962002
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467175|gb|FK976084.1|FK976084
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91878207|gb|EB408164.1|EB408164
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|76285904|gb|DV025472.1|DV025472
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|89759547|gb|DY688342.1|DY688342
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469692|gb|FK976089.1|FK976089
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469691|gb|FK976088.1|FK976088
EST:     GGAAGCAGTTGCCGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCGTCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|30307231|gb|CD001904.1|CD001904
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|149080870|gb|EE169951.2|EE169951
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467172|gb|FK976081.1|FK976081
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469695|gb|FK976092.1|FK976092
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|93281461|gb|EB673725.1|EB673725
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469693|gb|FK976090.1|FK976090
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCGTCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|76021472|gb|DT948642.1|DT948642
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|27522138|gb|CA989244.1|CA989244
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|148976019|gb|EE025878.2|EE025878
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|50322460|gb|CO517586.1|CO517586
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|30087318|gb|CB885526.1|CB885526
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71774560|gb|DR972438.1|DR972438
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91051589|gb|EB162007.1|EB162007
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78085115|gb|DV513508.1|DV513508
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78078210|gb|DV506625.1|DV506625
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91878508|gb|EB408465.1|EB408465
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACCAAG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCAC-AAG
EST: gi|78105462|gb|DV523880.1|DV523880
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71436209|gb|DR817259.1|DR817259
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|67022745|gb|CO451494.1|CO451494
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAATG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|50339595|gb|CO534721.1|CO534721
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCACGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91873291|gb|EB403248.1|EB403248
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|91050474|gb|EB160892.1|EB160892
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78113487|gb|DV531878.1|DV531878
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|33467744|gb|CF244793.1|CF244793
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469689|gb|FK976086.1|FK976086
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|40335239|gb|CK369309.1|CK369309
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|78121935|gb|DV540319.1|DV540319
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71298751|gb|DR785364.1|DR785364
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467171|gb|FK976080.1|FK976080
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211467174|gb|FK976083.1|FK976083
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCGTCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|211469696|gb|FK976093.1|FK976093
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|31363680|gb|CD448037.1|CD448037
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|71436272|gb|DR817322.1|DR817322
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|38687767|gb|CK144798.1|CK144798
EST:     GGAAGCAGTTGCTGCCGATTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAATG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
EST: gi|30087080|gb|CB885288.1|CB885288
EST:     GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAAC                         ATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG
genomic: GGAAGCAGTTGCTGCCGCTTCTCCGCACCCGCCTCGCTGACCAGTGCAACgtaagccctc ... ggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGGGAG
                                ttttatt  TA-rich tract