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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcctccctagcatgatgttggttggttaggtaattcgtcactgtggaaatcatggtttttctttcgtttcatctgccagCGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATG

Basic information

species Zea mays
transcript GRMZM5G812228_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812228_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g06350.2 (Oryza sativa), 3'ss of exon 2
gtaagtgcctccctagcatgatgttg-gttggttaggtaattcgtcactg-tggaaatcatgg------tttttctttcgtttcatctgccagCGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATG
|||||| | |      |      ||   |   ||||   ||||   |    ||||    |||       ||||  |||| | || |     |||  |||| ||||||||||| || ||||||||||| ||||| || |||||||| || ||  |||| || ||||| ||||| ||||||||| |||||
gtaagttcattttatacccataattatatcaattagtcgattcccaatcactggagtatatgaattaacttttattttcttatctttatttagCAATCATCAGCTTTGGAGGTGTGACAAATGACCAAAAAGAGGAGGCTAAAAATCATGGGATGTCCATATTCTCATGGGAGGAATTCCTGATCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28909677|gb|CB331047.1|CB331047
EST:     CTCCTGAAAACTTGCCACGCCACTTCGAAGTATCTGAAAA                         CGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAA
genomic: CTCCTGAAAACTTGCCACGCCACTTCGAAGTATCTGAAAAgtaagtgcct ... catctgccagCGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaggtaattcgtcactgtggaaatcatggtttttctttcgtttcatctgccagCGGTCATAAGCTTTGGAGGAGTCACAAATGACCATAAAGATGAAGCTAAAAAGCACGGCCTGTCTATTTTCTCTTGGGACGAATTCCTGGTCATG
                               tttttctttcgtttca  CT-rich tract
                               tttttcttt  TA-rich tract