1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttttgaggggtataattgcacaaaagtcttatctttcaaagcatataggaggtttctattttattcctcttattgatgttttctgttcacctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGATTCTGAGCAGTACAACAAACTTGAGAGACCTGTACGTGATGAATGTGAA
species | Zea mays |
transcript | GRMZM5G806309_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAG GTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGAEST: gi|67015187|gb|CO443936.1|CO443936
genomic: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAGgtatttactt ... acctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGA
EST: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAG GTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGAEST: gi|76286235|gb|DV025803.1|DV025803
genomic: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAGgtatttactt ... acctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGA
EST: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAG GTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGAEST: gi|71765228|gb|DR963165.1|DR963165
genomic: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAGgtatttactt ... acctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGA
EST: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAG GTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGA
genomic: CGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAGgtatttactt ... acctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGA
tataggaggtttctattttattcctcttattgatgttttctgttcacctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGATTCTGAGCAGTACAACAAACTTGAGAGACCTGTACGTGATGAATGTGAA
tattgat putative branch site (score: 162)
ttttctgttcacct CT-rich tract
tttctattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttttgaggggtataattgcacaaaagtcttatctttcaaagcatataggaggtttctattttattcctcttattgatgttttctgttcacctaaacagGTACGAGGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGATTCTGAGCAGTACAACAAACTTGAGAGACCTGTACGTGATGAATGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - -aattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctg