1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgcctcttgtgatttgtgatgttttgttggttgctgccagttttaactttgcccgtttcaacccctcacttctgtgtattgattgttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG
species | Zea mays |
transcript | GRMZM5G801793_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAG CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTEST: gi|211504649|gb|FL183082.1|FL183082
genomic: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAGgtttgcctct ... ttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
EST: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAG CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTEST: gi|24934155|gb|CA452373.1|CA452373
genomic: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAGgtttgcctct ... ttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
EST: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAG CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTEST: gi|32940571|gb|CF045390.1|CF045390
genomic: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAGgtttgcctct ... ttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
EST: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAG CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTEST: gi|6227219|gb|AW155818.1|AW155818
genomic: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAGgtttgcctct ... ttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
EST: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAG CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTEST: gi|33091106|gb|CF051100.1|CF051100
genomic: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAGgtttgcctct ... ttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
EST: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAG CTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
genomic: CTTGGTGCAGTTTCAAATACTGCATCTTATCTTCGACTTTGGGCTCTGAGgtttgcctct ... ttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACT
ttttaactttgcccgtttcaacccctcacttctgtgtattgattgttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG
tattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcctcttgtgatttgtgatgttttgttggttgctgccagttttaactttgcccgtttcaacccctcacttctgtgtattgattgttggtttcagCTTGGCGCATTCAGAGCTGTCAACAGTTTTCTATGAGAAGTTGCTGTTACTTGCCTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT