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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcgatgcttagagtttatgtattgctcttctgtatagcaacaaaagaataccttttaggtgatcattcacacaaatacgtattcatctcaatcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATA

Basic information

species Zea mays
transcript GRMZM5G801369_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801369_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 3'ss of exon 1
gtatgttcgatgcttagagtttatgtattgctcttctgtatagcaacaaaagaataccttttaggtg-atcattcacacaaatacgt-attcatctcaatcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATA
 | || ||  |  |   | | | | ||||  | |||||||  ||  || ||  || | |  ||  |  || |||   |  | ||  |  |  ||||  | |  |||  |    |  |||||||||||||||||| |  || ||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||       
-tctgatcactattagcaatatgtttatt-tttttctgtagtgct-cataaatatgcgtcataattttattattactattattattttgtcaatcttcaacagCAGTGGCTTGCCAAGATCAAATGAGGGCATGAGGCTCCTATTCTCAGCAGTTATTGGTGTTATGCTAGGTTACTTGTTTGGGATTTCATTTCCTACTGTC------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438212|gb|DR819262.1|DR819262
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAG                         TGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... tcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
EST: gi|149075694|gb|EE164238.2|EE164238
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAG                         TGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... tcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGG
EST: gi|149062889|gb|EE157609.2|EE157609
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGCAG                       
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGG-C-C-GCAGgtatgttcga ... tcttcagc
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGCAG                       
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGG-C-C-GCAGgtatgttcga ... tcttcagc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataccttttaggtgatcattcacacaaatacgtattcatctcaatcttcagcagTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATA
                                             tcttc  CT-rich tract
                        acaaata  TA-rich tract