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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcgatgcttagagtttatgtattgctcttctgtatagcaacaaaagaataccttttaggtgatcattcacacaaatacgtattcatctcaatcttcagCAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAAT

Basic information

species Zea mays
transcript GRMZM5G801369_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801369_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 3'ss of exon 1
gtatgttcgatgcttagagtttatgtattgctcttctgtatagcaacaaaagaataccttttaggtg-atcattcacacaaatacgt-attcatctcaatcttcagCAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAAT
 | || ||  |  |   | | | | ||||  | |||||||  ||  || ||  || | |  ||  |  || |||   |  | ||  |  |  ||||  | |  |||  |    |  |||||||||||||||||| |  || ||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||    
-tctgatcactattagcaatatgtttatt-tttttctgtagtgct-cataaatatgcgtcataattttattattactattattattttgtcaatcttcaacagCAGTGGCTTGCCAAGATCAAATGAGGGCATGAGGCTCCTATTCTCAGCAGTTATTGGTGTTATGCTAGGTTACTTGTTTGGGATTTCATTTCCTACTGTC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075694|gb|EE164238.2|EE164238
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGG-C-C-G                         CAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTAT
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... caatcttcagCAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTAT
EST: gi|488249|gb|T18830.1|T18830
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAG                         CAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATNCTCAGCAGTTAT
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... caatcttcagCAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTAT
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAG                         CAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTAT
genomic: AAGATAACACTCGGATATCTCATGGCAAAACCTGGGATTTTAGGCCGCAGgtatgttcga ... caatcttcagCAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaataccttttaggtgatcattcacacaaatacgtattcatctcaatcttcagCAGTGCACAGAGATCAAATGAGGGCATGCGAATCATATTCTCAGCAGTTATTGGTGTTATGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAAT
                                      ttcatctc  CT-rich tract
                           acaaata  TA-rich tract