Sequence
atgc intronic sequence ATGC exonic sequence...tttaccataatcttcaattaatcatttcaaaaagtatacatttttacctttttgtgatttcataacttcctgtatctcaatttcgtcgatttgtttctagATTGCCTCTGAGGGTTTAAAGCACAGAGTATTTGAGGTCTCCTTGGTTGATCTTCATAGTGATGAAGACAAGACGTACATGAAGATCAGACTTTGTGCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G703354_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 2
--------tttaccataatcttcaattaatcatttcaaaaagtatacatttttacctttttgtgatttcataacttcctgtatctcaatttcgtcgatttgtttctagATTGCCTCTGAGGGTTTAAAGCACAGAGTATTTGAGGTCTCCTTGGTTGATCTTCATAGTGATGAAGACAAGACGTACATGAAGATCAGACTTTGTGCGG
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tttgtctgttcatcatgctttaggtctgtcaacctctaaacctgta-gctgtcataattt-atgatgtcat---ctgctgattctcaatatttc---tttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGATCTCCAGAACGATGAGGATCAGGCGTACAGGAAGATCAGACTTCGTGCTG
upper sequence: GRMZM2G703354_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G10920.1 (Glycine max), 3'ss of exon 2
-----------------------------------------tttaccataatcttcaattaatcatttcaaaaagtatacatttttacctttttgtgatttcataacttcctgtatctcaatttcgtcgat--ttgtttctag-
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gtgtgtgcttattgcattttgtttctatgggagaacgagggtttatgaatctttcaagttgcctatttttatgggttttatggtatgtgatttggtgatatga--actt--tgtatgcttatttagactatggttgtttgaaatgacttattgcttatgaaggactcaaacatagAGTGTTTGAGGTCTCCTTGGTTGATCTTCAAGGAGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTGAAGATGTGCAAGGGAAAAATGTTCTG
upper sequence: GRMZM2G703354_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G39050.1 (Glycine max), 3'ss of exon 2
------tttaccataatcttcaattaatcatttcaaaaagtatacatttttacctttttgtgatttcataacttcctgtatctcaatttcgtcgatttgtttctagATTGCCTCTGAGGGTTTAAAGCACAGAGTATTTGAGGTCTCCTTGGTTGATCTTCATAGTGATGAAGACAAGACGTACATGAAGATCAGACTTTGTGCGG
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ggtctgcttactgtcgcttattttcaagcatattatggtgtgtga---cttggtgttatg-aactttgtatgctcatgtagactgtgattgtt--tcaaataacagATTGCTTCTGAAGGACTCAAGCATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctttttgtgatttcataacttcctgtatctcaatttcgtcgatttgtttctagATTGCCTCTGAGGGTTTAAAGCACAGAGTATTTGAGGTCTCCTTGGTTGATCTTCATAGTGATGAAGACAAGACGTACATGAAGATCAGACTTTGTGCGG
tcataac putative branch site (score: 2)
tttgtttct putative PPT
atttcataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaccataatcttcaattaatcatttcaaaaagtatacatttttacctttttgtgatttcataacttcctgtatctcaatttcgtcgatttgtttctagATTGCCTCTGAGGGTTTAAAGCACAGAGTATTTGAGGTCTCCTTGGTTGATCTTCATAGTGATGAAGACAAGACGTACATGAAGATCAGACTTTGTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatc