1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattaaaacaaaaattatcctatatcatatatataaaccgtagcaatgcacgggcatatgactagtcatgccttaaagtctaaaggtgcattttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTACATTGCAAGGTATCAGGAGTCTCAGATCATTTTGCACAAG
species | Zea mays |
transcript | GRMZM2G702490_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAG GCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTAEST: gi|211125174|gb|FL001724.1|FL001724
genomic: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatat ... ttttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTA
EST: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAG GCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTAEST: gi|211125176|gb|FL001726.1|FL001726
genomic: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatat ... ttttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTA
EST: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAG GCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTAEST: gi|211125178|gb|FL001728.1|FL001728
genomic: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatat ... ttttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTA
EST: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAG GCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTA
genomic: TAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatat ... ttttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTA
atgcacgggcatatgactagtcatgccttaaagtctaaaggtgcattttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTACATTGCAAGGTATCAGGAGTCTCAGATCATTTTGCACAAG
gtctaaa putative branch site (score: 73)
catttttt putative PPT
attttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaaaacaaaaattatcctatatcatatatataaaccgtagcaatgcacgggcatatgactagtcatgccttaaagtctaaaggtgcattttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTACATTGCAAGGTATCAGGAGTCTCAGATCATTTTGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - -atgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggtgca