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gttcatacaacactgttgtccctttttgcaacctcagttttaaaatcatttctgaagcccaagttcattagccagcttgtctatcatgattattgatattgatttttttttgctccatcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATACTGTACTACAGATCCGTTCCCTGGTTTTGGAAG
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|40286942|gb|CK327334.1|CK327334
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ACCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|40286924|gb|CK327316.1|CK327316
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|91875692|gb|EB405649.1|EB405649
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|211231533|gb|FL255917.1|FL255917
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|34391316|gb|CF384544.1|CF384544
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|211077181|gb|FL069427.1|FL069427
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: GGCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|211074451|gb|FL069426.1|FL069426
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATEST: gi|101394395|gb|EB819132.1|EB819132
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
EST: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAG CTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
genomic: ATCAGTGATGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTTGATAAAAGgttcatacaa ... catcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAAT
gccagcttgtctatcatgattattgatattgatttttttttgctccatcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATACTGTACTACAGATCCGTTCCCTGGTTTTGGAAG
tattgat putative branch site (score: 10)
tttttttttgctccat CT-rich tract
tatcatgattattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatacaacactgttgtccctttttgcaacctcagttttaaaatcatttctgaagcccaagttcattagccagcttgtctatcatgattattgatattgatttttttttgctccatcttacagCTACTTCCATTTTGTCCATGAGTTTGTGACTATTTTAATGGATACCACAATACTGTACTACAGATCCGTTCCCTGGTTTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG