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gtttctgatctttagatgccaaacttttggcattcctttacacgattcagttttctttagtgctcattgaatagtaacataacaccttaattccagTGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCATATGATGAAGCTCAGTCATACGCAAAATTACGATGTCAGCAAGAAGACC
species | Zea mays |
transcript | GRMZM2G569855_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGTTGTGATGCTGTCATCGTCATGCCCGTGACGACACCAGAAATCAAG TGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCAEST: gi|211312346|gb|FL453729.1|FL453729
genomic: TGGGTTGTGATGCTGTCATCGTCATGCCCGTGACGACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCA
EST: TGGGTTGTGATGCTGTCATCGTCATGCCCGTGACGACACCAGAAATCAAG TGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCA
genomic: TGGGTTGTGATGCTGTCATCGTCATGCCCGTGACGACACCAGAAATCAAGgtttctgatc ... ttaattccagTGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCA
acgattcagttttctttagtgctcattgaatagtaacataacaccttaattccagTGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCATATGATGAAGCTCAGTCATACGCAAAATTACGATGTCAGCAAGAAGACC
ttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctgatctttagatgccaaacttttggcattcctttacacgattcagttttctttagtgctcattgaatagtaacataacaccttaattccagTGGAAATCAGTGGAGCGGTTGGGAGCAACGGTGGTCCTTGAGGGGGACTCATATGATGAAGCTCAGTCATACGCAAAATTACGATGTCAGCAAGAAGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG