1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgtgcctattcttctcttcattgttttatagtccaagttagtcaagtttcttggttttttgtgctatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAGCAGAGCATGACATCCAATGAACTTAAAACCTTAGAACTCAATTTCTTAA
species | Zea mays |
transcript | GRMZM2G527387_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATG CAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAGEST: gi|93014137|gb|EB639657.1|EB639657
genomic: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATGgtttgtgcct ... tatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAG
EST: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATG CAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAGEST: gi|211377939|gb|FK982087.1|FK982087
genomic: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATGgtttgtgcct ... tatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAG
EST: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGGTTGATGATCTCATG CAACTCTATGCTTTATTCGATCCTGTTAATGGGGGAGAAGAGTTTGGAGCAEST: gi|78105909|gb|DV524327.1|DV524327
genomic: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATGgtttgtgcct ... tatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGG-AGAAGAGTTTGGAGCA
EST: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATG CAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAG
genomic: TGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATGgtttgtgcct ... tatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAG
attgttttatagtccaagttagtcaagtttcttggttttttgtgctatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAGCAGAGCATGACATCCAATGAACTTAAAACCTTAGAACTCAATTTCTTAA
tttatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcctattcttctcttcattgttttatagtccaagttagtcaagtttcttggttttttgtgctatggtgcagCAACTCTATGCTTTATTCGATCCTGTTAATGGGGAGAAGAGTTTGGAGCAGCAGAGCATGACATCCAATGAACTTAAAACCTTAGAACTCAATTTCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA