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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttatattctcattagctgcagtttccattaataaatggtcttcgttaacctatcctataatttctttttgcagGGGAACAATTAGATATGCGAGTGTCCATGCTCATTTGGGGTGCACTGGTAGTAGGAGGGATGATTTAGAGTTACTGGCATACACCCTTATTTTCCTGATA

Basic information

species Zea mays
transcript GRMZM2G508368_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G508368_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 3'ss of exon 9
gttggttatattctcattagctgcagtttccattaataa-atggtcttcgttaacctatcctataatt-tctttttgcagGGGAACAATTAGATATGCGAGTGTCCATGCTCATTTGGGGTGCACTGGTAGTAGGAGGGATGATTTAGAGTTACTGGCATACACCCTTATTTTCCTGATA
|||||  ||||||||  |        | ||  |   | | || ||  |  |||     |  |||  |  | ||||| |||||| |||||||||||||| ||||||||||| ||||| ||  | |||||||||||||||||||||||||||| | |||| ||||||||||| || || |||
gttggcaatattctctctgtacctgctatctgtctctcatatagtgctttttacttatttttatcttcgttttttttcagGGGTACAATTAGATATGCCAGTGTCCATGCCCATTTAGGCCGTACTGGTAGTAGGAGGGATGATTTAGAGTCATTGGCGTACACCCTTATATTTCTAATA

upper sequence: GRMZM2G508368_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G04580.1 (Glycine max), 3'ss of exon 9
gttggttatattctcattagctgcagtttccattaataaatggtcttcgttaacctatcctataatttctttttg--cagGGGAACAATTAGATATGCGAGTGTCCATGCTCATTTGGGGTGCACTGGTAGTAGGAGGGATGATTTAGAGTTACTGGCATACACCCTTATTTTCCTGATA
||| || ||||| | || |  ||    |       |||  | |  ||     |   ||  ||  ||  |||||||  |||||||||||| || ||||| ||||| ||||| ||||| ||  | ||||| ||| | ||||||||  | |||| |||||||||||| ||  | || || |||
gtttgt-atatt-ttatgacttgtttgtcatggctatattttgcttttacatattgatgataatatgcctttttgtgcagGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAGTCGAAGGGATGACCTTGAGTCACTGGCATACACACTAGTATTTCTCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttccattaataaatggtcttcgttaacctatcctataatttctttttgcagGGGAACAATTAGATATGCGAGTGTCCATGCTCATTTGGGGTGCACTGGTAGTAGGAGGGATGATTTAGAGTTACTGGCATACACCCTTATTTTCCTGATA
                        cgttaac  putative branch site (score: 3)
                                          tttctttttgc  putative PPT
                                     tataatttcttttt  TA-rich tract