1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actgcacactccattttcttttttatcaagaactacagtgctgttagtgtatacaatggtatcctgaacggagattcctgctgtgcaaaaaaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCTGCCTTTTCTTTGTTGCTGGCTTCGCCGGTGCTATCAGTGGCGTTCTCG
species | Zea mays |
transcript | GRMZM2G488458_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|91877683|gb|EB407640.1|EB407640
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|211402516|gb|FL246548.1|FL246548
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|211399980|gb|FL246545.1|FL246545
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|211399982|gb|FL246547.1|FL246547
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|211402517|gb|FL246549.1|FL246549
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGCAGEST: gi|26558346|gb|CA830581.1|CA830581
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTAT---Ggtaagccctt ... aaaactgc
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|22546220|gb|BU098516.1|BU098516
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCEST: gi|87155227|gb|DY400016.1|DY400016
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
EST: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATG TATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
genomic: TGCAGGACGGCGTACCCGGGTGCAAGGAGGAAGGAGAAGGGAATAGTATGgtaagccctt ... aaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGC
agtgtatacaatggtatcctgaacggagattcctgctgtgcaaaaaaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCTGCCTTTTCTTTGTTGCTGGCTTCGCCGGTGCTATCAGTGGCGTTCTCG
aaaaaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgcacactccattttcttttttatcaagaactacagtgctgttagtgtatacaatggtatcctgaacggagattcctgctgtgcaaaaaaaactgcagTATCTTGAGCGAGGAGAAAGAAGTGGTACAAAGGACGATCCGGAGGCGAGCTGCCTTTTCTTTGTTGCTGGCTTCGCCGGTGCTATCAGTGGCGTTCTCG
actgcac
- - - - - - - - - - - - - - - aactaca
- - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgaac