1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agactcgttgatttagtttatccttgcagtctaatttttcatttcaaaaaataaatctgttataactcctttatactgttttgatttttccccttttcagTTGGCGGCTGGTTTGCTACCCTTGCGGTCGCAGGATATACAGCATTAGCTGTGAGAAAACTTGTGAAAACACAGCTTATACCAGCAGAGCCCATGAGCAA
species | Zea mays |
transcript | GRMZM2G478212_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCAGGGATGTCCCAGCGGCTTCAGGAGTCAAGATTTTTGCAATCACTT TTGGCGGCTGGTTTGCTACCCTTGCCGTCGCAGGA-ATACAGCATTAGCTGEST: gi|211213407|gb|FL105879.1|FL105879
genomic: CGTCAGGGATGTCCCAGCGGCTTCAGGAGTCAAGATTTTTGCAATCACTTgtatgtatta ... cccttttcagTTGGCGGCTGGTTTGCTACCCTTGCGGTCGCAGGATATACAGCATTAGCTG
EST: TCAGGGATGTCCCCAGCG-CTTCAAGAGTCAAGATTTTTTGCA-TCACTT TTGGCGGCTGGTTTGCTACCCTTGCGGGTCGCAG-ATATACAGCATTAGCT
genomic: TCAGGGATGTCCC-AGCGGCTTCAGGAGTCAAGATTTTT-GCAATCACTTgtatgtatta ... cccttttcagTTGGCGGCTGGTTTGCTACCCTTGCGG-TCGCAGGATATACAGCATTAGCT
aaaaaataaatctgttataactcctttatactgttttgatttttccccttttcagTTGGCGGCTGGTTTGCTACCCTTGCGGTCGCAGGATATACAGCATTAGCTGTGAGAAAACTTGTGAAAACACAGCTTATACCAGCAGAGCCCATGAGCAA
ctgttttgatttttcc CT-rich tract
ataaatctgttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agactcgttgatttagtttatccttgcagtctaatttttcatttcaaaaaataaatctgttataactcctttatactgttttgatttttccccttttcagTTGGCGGCTGGTTTGCTACCCTTGCGGTCGCAGGATATACAGCATTAGCTGTGAGAAAACTTGTGAAAACACAGCTTATACCAGCAGAGCCCATGAGCAA
- - - - - - - - - - tccttgc
- - - - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg