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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatacctttgactaccattctgttatttctttagatctttggctctaatacaaatgtggatggctttagaagtcttgtcttctccatctaaaatgctttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG

Basic information

species Zea mays
transcript GRMZM2G476933_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G476933_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g42550.1 (Oryza sativa), 3'ss of exon 2
-------gtagatacctttgactaccattctgttatttctttagatctttggctctaatacaaatgtggatggctttagaagtcttgtcttctccatctaaaatgc-tttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG
        ||||||  |||  || |  |  || |   |    |  ||  | | | || || |||||  |||| ||  || |||||  ||| ||  |||||| |  |  ||| | ||||||||||| |||||||| |||||||| |||||||||||||| ||||  || ||||||||||| || |||||||||||||| ||    ||||||||   |||
gtacccactagataaatttc-cttctttagtgctgccttgaaatttcactaggtttagtagaaatgacgatgactgcagcagtctc-tctgctttatctaagaaacacttggacacagGTGATACTCCAAGGCGCTCTGCTCGCATTAGCGAGAAAGTTAAGGCTTTCGATAGCCCAGAAGGGGAGAAGATCCCGAAACGTTCTAGGAACTCATCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23199769|gb|BU582334.1|BU582334
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211079603|gb|FL173106.1|FL173106
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|148969588|gb|EE020424.2|EE020424
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|31353919|gb|CD438276.1|CD438276
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149086199|gb|EE175739.2|EE175739
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211079597|gb|FL173100.1|FL173100
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149080723|gb|EE169784.2|EE169784
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149086859|gb|EE176403.2|EE176403
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|22521363|gb|BU080174.1|BU080174
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149069892|gb|EE158289.2|EE158289
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|23199674|gb|BU582239.1|BU582239
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149070031|gb|EE158432.2|EE158432
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211076871|gb|FL173099.1|FL173099
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|22521399|gb|BU080210.1|BU080210
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149098547|gb|EE184535.2|EE184535
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211079611|gb|FL173114.1|FL173114
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|148982281|gb|EE028230.2|EE028230
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211076868|gb|FL173096.1|FL173096
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211076863|gb|FL173091.1|FL173091
EST:     AAAGGCACACCCAGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|71431687|gb|DR812737.1|DR812737
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211076867|gb|FL173095.1|FL173095
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149046685|gb|EE048075.2|EE048075
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|5268616|gb|AI770580.1|AI770580
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|71757691|gb|DR955628.1|DR955628
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|22542114|gb|BU092552.1|BU092552
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|148966344|gb|EE017331.2|EE017331
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149004787|gb|EE039289.2|EE039289
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|148938125|gb|EC882396.2|EC882396
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|87156591|gb|DY401380.1|DY401380
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149083281|gb|EE172567.2|EE172567
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|211076865|gb|FL173093.1|FL173093
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|148947078|gb|EC892380.2|EC892380
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|5566721|gb|AI881737.1|AI881737
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|149087740|gb|EE177078.2|EE177078
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
EST: gi|22542536|gb|BU092974.1|BU092974
EST:     TGATTGGTGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTATCGAGAAAGTCAAGGTATTT
genomic: TGATT-GTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTT
EST: gi|211079599|gb|FL173102.1|FL173102
EST:     AAAGGCACACCCTGGAGGCCCTGCTGTTTCAGAGTTTGATTGGGGAACTG                         GTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG
genomic: AAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 890

TCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 205

TCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 106

TCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 439

TCACCAACTGGTGAGGAAATTAACAACAAGAGGCAATTACTTCAGTACCTAAAGGCACACCCTGGAGGCCCTGCTGTTTCATAGCTTGATTGTGGAACTGgtagatacct ... ttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtggatggctttagaagtcttgtcttctccatctaaaatgctttgcaaacagGTGATACCCCAAGGCGTTCTGCTCGTATTAGCGAGAAAGTCAAGGTATTTGATAGCCCAGAGGGCGAGAAGATCCCGAAGCGCAGCAGGAACTCCAGTGG
                                 atctaaa  putative branch site (score: 439)
                                 atctaaaat  TA-rich tract