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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttccctggtattttgctttcctaggaatacatgttatcctctgtataagtatctttaatttcctttaattgtaaactcatttgcatccagAAATTTCAAAGGAAGGAGTTGTCTGGAAAAGAAAGTTGCTCGGAAGTTCTTAATCTCTTCCGTGATGCCCCATCTCCATCATTTTCTTCAGTTAACAAAA

Basic information

species Zea mays
transcript GRMZM2G474769_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G474769_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g06110.2 (Oryza sativa), 3'ss of exon 6
------------gtaattttccctggtattttgctttcctaggaatacatgttatcctctgtataagtatctttaatttcctttaattgtaaactcatttgcatccagAAATTTCAAAGGAAGGAGTTGTCTGGAAAAGAAAGTTGCTCGGAAGTTCTTAATCTCTTCCGTGATGCCCCATCTCCATCATTTTCTTCAGTTAACAAAA
            ||| | || | |  || || | ||||        |  | |  |  ||| || | ||    |    || ||||||    ||||||| || ||| |||||| ||||||| |||||| | |||| ||||| ||||||||| ||||||||||||||||| || || | ||||||  ||||||||||||||||||||||||
gtacatacctttgtagtatttcgttttagttaggtttctatttttgatttatccttttcttta-atgtgctatcctgtttctttaacaagaaactcacttacattcagAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTAATCTCTTTCGAGAAGTCCCATCGGCATCATTTTCTTCAGTTAACAAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctctgtataagtatctttaatttcctttaattgtaaactcatttgcatccagAAATTTCAAAGGAAGGAGTTGTCTGGAAAAGAAAGTTGCTCGGAAGTTCTTAATCTCTTCCGTGATGCCCCATCTCCATCATTTTCTTCAGTTAACAAAA
                           ctttaat  putative branch site (score: 4)
                                        ctcattt  putative PPT
        tataagtatctttaat  TA-rich tract