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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatccccaataccctgcgccatgacctcgcatcccgttacatactaaaccaccggtttacgagacttaagttagtttttctttttgcctggacttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA

Basic information

species Zea mays
transcript GRMZM2G472991_T04
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384971|gb|BM418170.1|BM418170
EST:     CAAGGACTGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAAC                         CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATTGCCAGACTGAA
genomic: CAAGGAC-GACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAACgtaagatccc ... cttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
EST: gi|76014878|gb|DT942048.1|DT942048
EST:     CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAAC                         CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
genomic: CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAACgtaagatccc ... cttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
EST: gi|18384009|gb|BM417209.1|BM417209
EST:     CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAAC                         CACGAGA-TGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
genomic: CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAACgtaagatccc ... cttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
EST: gi|18383990|gb|BM417190.1|BM417190
EST:     CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAAC                         CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
genomic: CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAACgtaagatccc ... cttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
EST: gi|76014835|gb|DT942005.1|DT942005
EST:     CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAAC                         CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
genomic: CCAAGGACGACTTCCGCGTCCTTACCGCCGTCGAGATGGGCATGCGCAACgtaagatccc ... cttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaccggtttacgagacttaagttagtttttctttttgcctggacttgtcacagCACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA
                       ttagtttttcttttt  TA-rich tract