1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaataattcttcacatgttgctttgctcaaaggtcgaattgtttgattaggaacatattatcatgtcttttgactagtgtgtgctctgtgctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCCTGTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGCACTGTTCGTC
species | Zea mays |
transcript | GRMZM2G472770_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAG ATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCEST: gi|211217816|gb|FL070071.1|FL070071
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAGgtatagcctg ... gctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAG ATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCEST: gi|211217811|gb|FL070066.1|FL070066
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAGgtatagcctg ... gctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAG ATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCEST: gi|211217815|gb|FL070070.1|FL070070
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAGgtatagcctg ... gctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAG ATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCEST: gi|211217814|gb|FL070069.1|FL070069
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAGgtatagcctg ... gctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAG ATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCEST: gi|60395034|gb|DN227903.1|DN227903
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAGgtatagcctg ... gctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAG ATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATTACCCTACATCTAAAGgtatagcctg ... gctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGC
gattaggaacatattatcatgtcttttgactagtgtgtgctctgtgctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCCTGTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGCACTGTTCGTC
ttttgac putative branch site (score: 108)
aacatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaataattcttcacatgttgctttgctcaaaggtcgaattgtttgattaggaacatattatcatgtcttttgactagtgtgtgctctgtgctgttgcagATTTTAAATTTGACTGAGCTGGAACTCAACAGGGTGGACATCCGTGTTGGCCTGTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGCACTGTTCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - -cttcaca
- - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctc