1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattgatttttctggatgttgatggtctccttccctctatacgttacaaggattttctaaaaacattatgaaactgcagGGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGCAGATGCTGTGGATGCAAGACAG
species | Zea mays |
transcript | GRMZM2G470438_T06 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACAGTCATCTTAACATTTGGAGGGCTCGCTTCTCAGCTTTGATTGATAG GGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGCEST: gi|86467513|gb|DY233883.1|DY233883
genomic: AACAGTCATCTTAACATTTGGAGGGCTCGCTTCTCAGCTTTGATTGATAGgtattgattt ... gaaactgcagGGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGC
EST: AGCTTTGATTGATAG GGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGC
genomic: AGCTTTGATTGATAGgtattgattt ... gaaactgcagGGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGC
gtctccttccctctatacgttacaaggattttctaaaaacattatgaaactgcagGGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGCAGATGCTGTGGATGCAAGACAG
ttctaaa putative branch site (score: 2)
attttctaaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatttttctggatgttgatggtctccttccctctatacgttacaaggattttctaaaaacattatgaaactgcagGGAGATACATGAATCTGTGCAACATCTTGGCAGGCCCAACAAGCTCTTTGCAGATGCTGTGGATGCAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA