Sequence
atgc intronic sequence ATGC exonic sequencegtatacaagataaaagaaaatttaggccttgcatgattattagcattttgcaatgcagcttacctaggtttactgccttgataagctttcgtttatgctcctaagttgtgatttacaaggacaattttgctaccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGTTTTCAGAGACTACTAAAGCAGAGAGGGAGCTTAACTGGAAGTAAGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G469523_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g28730.1 (Oryza sativa), 3'ss of exon 7
gtatacaagataaaagaaaatttaggccttgcatgattattagcattttgcaatgcagcttacctaggtttactgccttgataagctttcgtttatgctcctaagttgtgatttacaaggacaattttgctaccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGTTTTCAGAGACTACTAAAGCAGAGAGGGAGCTTAACTGGAAGTAAGTCA
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-----------------------------taggtgattgttagcattt---attgtagataaaatgctttctccagcttgcgcgccttgccaggat-ttgctttgttcttattttttttaattgctgtgcta-------gAAAATTCCTCTGATTATTGGCCCAAGACGCCCTGGTGATGCGGAGATTCTATTTTCATTACCTGCTAAAGCAGAGAAGGAACTCAACTGGAA-------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttcgtttatgctcctaagttgtgatttacaaggacaattttgctaccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGTTTTCAGAGACTACTAAAGCAGAGAGGGAGCTTAACTGGAAGTAAGTCA
ttttgct CT-rich tract
atttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatacaagataaaagaaaatttaggccttgcatgattattagcattttgcaatgcagcttacctaggtttactgccttgataagctttcgtttatgctcctaagttgtgatttacaaggacaattttgctaccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGTTTTCAGAGACTACTAAAGCAGAGAGGGAGCTTAACTGGAAGTAAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG