1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agagatcttgccattttcgttcaaaaaaatatatatatcagcccccataaaccagggacatgtgccggtgcctgaacttgcttatgttacttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGATGTATTCCGTTTCTGATATTTTTTGTGTTGGCTGCGGAGAGATTGTTGGA
species | Zea mays |
transcript | GRMZM2G468740_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTTTTCGATAATGT TGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGATEST: gi|211490727|gb|FL051563.1|FL051563
genomic: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGTgtaagtgacc ... ttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGAT
EST: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATTT TGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGAEST: gi|211490726|gb|FL051562.1|FL051562
genomic: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGTgtaagtgacc ... ttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGA
EST: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATTT TGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGANCNACAGGGAEST: gi|211490725|gb|FL051561.1|FL051561
genomic: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGTgtaagtgacc ... ttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATC-ACAGGGA
EST: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGT TGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGATEST: gi|211490728|gb|FL051564.1|FL051564
genomic: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGTgtaagtgacc ... ttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGAT
EST: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTTTTCGATAATGT TGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGAEST: gi|148941325|gb|EC886232.2|EC886232
genomic: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGTgtaagtgacc ... ttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGA
EST: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGT TGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGAT
genomic: AGCTTCCATTGCAAGAACGGGAAGGCTTACCTCTTCGATAATGTgtaagtgacc ... ttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGAT
cataaaccagggacatgtgccggtgcctgaacttgcttatgttacttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGATGTATTCCGTTTCTGATATTTTTTGTGTTGGCTGCGGAGAGATTGTTGGA
ttatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagatcttgccattttcgttcaaaaaaatatatatatcagcccccataaaccagggacatgtgccggtgcctgaacttgcttatgttacttatgcccagTGTCAATGTAACCGTTGGAGAGAAAGAAGACCGCATGACGATCACAGGGATGTATTCCGTTTCTGATATTTTTTGTGTTGGCTGCGGAGAGATTGTTGGA
- - - - tgccatt
- - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg