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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacaatgttcaataccagttttttttgttttgttccgtgcatgtgatgaatgaatcttaaattagggagattggtaaccttattacctttttgtctgacttactttaatatctacagTTGCAATGCAGGGAAATTATCCTGGACGGAACAGACGTGTCGAAGGCGATCGTCGATTTCGTCGCCACCAACAAGGTCGACAAGTTAGTGCTGGGCTCAG

Basic information

species Zea mays
transcript GRMZM2G467703_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467703_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g05820.1 (Oryza sativa), 3'ss of exon 2
gtatgcacaatgttcaataccagttttttttgttttgttccgtgcatgtgatgaatgaatcttaaattagggagattggtaaccttattacctttttgtctgacttactttaatatctacagTTGCAATGCAGGGAAATTATCCTGGACGGAACAGACGTGTCGAAGGCGATCGTCGATTTCGTCGCCACCAACAAGGTCGACAAGTTAGTGCTGGGCTCAG
     || |   |  | ||  | |||  |||  ||||||      |  ||||||        ||   |  | | | |  | ||| |      |||||| ||||||| ||||||||||||||||| |||||||||||||  || || || ||||| || |||| ||| |  ||  | ||||| |||     | | || || ||||| ||||| |||||  || 
----tcatataatctattaagattttgctttcctttgtttg----acctgatga--------tagcatgagcaaaatcatgaccct------tttttggctgacttgctttaatatctacagTTACAATGCAGGGAAACCATTCTTGATGGAACTGATGTGTGGAAAGTTATTATAGATTTTGTCCTTGACCATAAAGTTGACAAATTAGTACTGGGGGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148959319|gb|EE010722.2|EE010722
EST:     AGGCGAAAGATCTGATGATCCCCTTCCAGTGTTTCTGCAGCAGGAGAGGG                         TTGCAATGCAGGGAAATTATCCTGGACGGAACAGACGTGTCGAAGGCGATC
genomic: AGGCGAAAGATCTGATGATCCCCTTCCAGTGTTTCTGCAGCAGGAGAGGGgtatgcacaa ... atatctacagTTGCAATGCAGGGAAATTATCCTGGACGGAACAGACGTGTCGAAGGCGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagggagattggtaaccttattacctttttgtctgacttactttaatatctacagTTGCAATGCAGGGAAATTATCCTGGACGGAACAGACGTGTCGAAGGCGATCGTCGATTTCGTCGCCACCAACAAGGTCGACAAGTTAGTGCTGGGCTCAG
                                     ttactttaatatcta  TA-rich tract