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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcgcccacattgcatgctgttgattctgtctccgaacgctgcagtggagtggaccggatctaattccgcttctgctttggtcatccatcttacccttccatgcaatatgttctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCCTGCTGATGAAGCTAAAACAGGCCTCCACAAACTTTCCAAG

Basic information

species Zea mays
transcript GRMZM2G467086_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g01430.1 (Oryza sativa), 3'ss of exon 2
gtacggcgcccacattgcatgctgttgattctgtctccgaacgctgcagtggagtggaccggatct--aattccgcttctgctttggtcatcc-atcttacccttccatgcaatatgttctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCCTGCTGATGAAGCTAAAACAGGCCTCCACAAACTTTCCAAG
                        ||   | |  |   | |  || ||    | | |   | || |  ||   |  ||||   ||||   |   ||   |  ||| ||| |       | | |  |||||| || || |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||
------------------------ttcgctttaaccttgca-actacaacatatttgcatgtatttgcaaaggctattctaggttggctgtttgatgaaattcttacatactcc---ctttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g01420.1 (Oryza sativa), 3'ss of exon 2
----------------------------------------------------------------gtacggcgcccacattgcat----gctgttgattctgtctccgaacgctgcagtggagtggaccggatct--aattccgcttctgctttggtcatcc-atcttacccttccatgcaatatgttctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCCTGCTGATGAAGCTAAAACAGGCCTCCACAAACTTTCCAAG
                                                                 || |  ||  | |||| ||    ||| ||   | |  |   | |  || ||    | | |   | || |  ||   |  ||||   ||||   |   ||   |  ||| ||| |       | | |  |||||| || || |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| || ||||||||||||
gtagctgcctcttattattattagtctagccagtacggtgcctctctgctcaaagcatcaaacgatatgctgcatagattgaattttggcttttcgctttaaccttgca-actacaacatatttgcatgtatttgcaaaagctattctagattggctgtttgatgaaattcttacatactcc---ctttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21891514|gb|BQ744727.1|BQ744727
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|26559664|gb|CA831899.1|CA831899
EST:     AGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|149010282|gb|EE042111.2|EE042111
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|60347115|gb|DN214088.1|DN214088
EST:     TCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCA
genomic: TCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|26558517|gb|CA830752.1|CA830752
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|22133771|gb|BQ833893.1|BQ833893
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|61118871|gb|DN559832.1|DN559832
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|67015514|gb|CO444263.1|CO444263
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|20802773|gb|BQ293823.1|BQ293823
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|71441332|gb|DR822382.1|DR822382
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|37397689|gb|CF636152.1|CF636152
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|40337158|gb|CK371228.1|CK371228
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|5499042|gb|AI854909.1|AI854909
EST:     AGGAATCAGAAGCTC-GGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|71434423|gb|DR815473.1|DR815473
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|71447892|gb|DR828942.1|DR828942
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|71322698|gb|DR798027.1|DR798027
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|211520202|gb|FL010171.1|FL010171
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|29130506|gb|CB381210.1|CB381210
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|22819557|gb|BU499647.1|BU499647
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAC                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|22545521|gb|BU097880.1|BU097880
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|67020213|gb|CO448962.1|CO448962
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|120480859|gb|EH211066.1|EH211066
EST:     AGGAATCAGAAGCTCAAGGACCTYAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|101383868|gb|EB813989.1|EB813989
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|60399755|gb|DN232565.1|DN232565
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|20301485|gb|BQ164428.1|BQ164428
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|148969444|gb|EE020248.2|EE020248
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|78026443|gb|DV494830.1|DV494830
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|5398724|gb|AI812189.1|AI812189
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|28987333|gb|CB351581.1|CB351581
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|149015123|gb|EE044887.2|EE044887
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|87156128|gb|DY400917.1|DY400917
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|22549184|gb|BU101385.1|BU101385
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|89761969|gb|DY689774.1|DY689774
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|21810013|gb|BQ668331.1|BQ668331
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|78119879|gb|DV538263.1|DV538263
EST:     AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
EST: gi|45568458|gb|CK986074.1|CK986074
EST:     GGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG                         GATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC
genomic: GGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCGAGCAGgtacggcgcc ... tctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcttctgctttggtcatccatcttacccttccatgcaatatgttctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCCTGCTGATGAAGCTAAAACAGGCCTCCACAAACTTTCCAAG
                     atcttac  putative branch site (score: 3)
                                            ttctgttcc  putative PPT
                                      aatatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacggcgcccacattgcatgctgttgattctgtctccgaacgctgcagtggagtggaccggatctaattccgcttctgctttggtcatccatcttacccttccatgcaatatgttctgttccagGATTTTTCTCGCTGGAAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCGCCTGCTGATGAAGCTAAAACAGGCCTCCACAAACTTTCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC