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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaccaatcctactacttcgtcgtgccactgctatcacgagctgtcaaaagccagcctaaaatcatagtagtatgtgtttggctggttgacttggtgttcttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTTCGCGACAAATCACATTG

Basic information

species Zea mays
transcript GRMZM2G464885_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G464885_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g40020.1 (Oryza sativa), 3'ss of exon 5
gtaagtaccaatcctactacttcgtcgtgccactgctatcacgagctgtcaaaagccagcctaaa-atcatagtagtatgtgtttggctggttgactt---ggtgttcttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTTCGCGACAAATCACATTG
                 |     |||       |   | ||  | || | ||||||| |    |  || ||  |  | |    ||   |  |  | ||     |||  || |  |||| || ||||||||| | |||||||||| ||||||||| |||   |||||||||||| |||| || || ||||||||||| |
-----------------tgtcatgtcaaaat-ttaacaccatcatctattaaaagccggatggagtattattattttgtcaacttaaataataaatttttaactgtggttataaacagTAATAATGCTGGAATCATGACAAGGAACTGCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762078|gb|DY689837.1|DY689837
EST:     AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTTTCAT                         CAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
genomic: AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATgtaagtacca ... ttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
EST: gi|71448014|gb|DR829064.1|DR829064
EST:     AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCAT                         CAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
genomic: AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATgtaagtacca ... ttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
EST: gi|71448013|gb|DR829063.1|DR829063
EST:     GATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTTCTCAT                         CAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCC
genomic: GATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATT-CTCATgtaagtacca ... ttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCC
EST: gi|71433932|gb|DR814982.1|DR814982
EST:     AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCAT                         CAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
genomic: AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATgtaagtacca ... ttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
EST: gi|211448633|gb|FL092879.1|FL092879
EST:     AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCAT                         CAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT
genomic: AGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATgtaagtacca ... ttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaaaatcatagtagtatgtgtttggctggttgacttggtgttcttttcgacagCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTTCGCGACAAATCACATTG
                                        tgttcttttc  CT-rich tract
     aatcata  TA-rich tract