1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagagttgaagatatgaagtcgctgtttaattggtttgaatttattaattagtgatgactagtcatcgttatttcttattttccttattttgtcttgcagGGCTCAAG
species | Zea mays |
transcript | GRMZM2G464000_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAGEST: gi|116822827|gb|EC866276.1|EC866276
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAGEST: gi|26558158|gb|CA830393.1|CA830393
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAGEST: gi|67024103|gb|CO452852.1|CO452852
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAGEST: gi|21987866|gb|BQ779394.1|BQ779394
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAGEST: gi|32931653|gb|CF036465.1|CF036465
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: TCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAGEST: gi|32934961|gb|CF039773.1|CF039773
genomic: TCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
taattagtgatgactagtcatcgttatttcttattttccttattttgtcttgcagGGCTCAAG
tattaat putative branch site (score: 2)
ttatttcttattttcc putative PPT
ttatttcttattttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagttgaagatatgaagtcgctgtttaattggtttgaatttattaattagtgatgactagtcatcgttatttcttattttccttattttgtcttgcagGGCTCAAG
- - - - - - - - - gtcgctg
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgatga