1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagagccttctagtaggtttctgtattgtagccaagttacaccaacatgggatctggaatggtgctataactgaatatgaactttatccttgtctcccagGTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTGGAGGGATTCTTGGGTGGCAACAAGATCTGTCATGAAAGTGAAGACGTTTCAGATC
species | Zea mays |
transcript | GRMZM2G462325_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAAGAATACCTGGCAATCGCCTTCTTGACGAAGATGAGTATGAGAG GTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTGGAGGGAEST: gi|89761727|gb|DY689627.1|DY689627
genomic: CCAAGAAGAATACCTGGCAATCGCCTTCTTGACGAAGATGAGTATGAGAGgtgtgctatt ... tgtctcccagGTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTGGAGGGA
EST: CCAAGAAGAATACCTGGCAATCGCCTTCTTGACGAAGATGAGTATGAGAG GTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTG
genomic: CCAAGAAGAATACCTGGCAATCGCCTTCTTGACGAAGATGAGTATGAGAGgtgtgctatt ... tgtctcccagGTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTG
catgggatctggaatggtgctataactgaatatgaactttatccttgtctcccagGTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTGGAGGGATTCTTGGGTGGCAACAAGATCTGTCATGAAAGTGAAGACGTTTCAGATC
ctataac putative branch site (score: 49)
ctttatccttgtctcc putative PPT
aatatgaactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagccttctagtaggtttctgtattgtagccaagttacaccaacatgggatctggaatggtgctataactgaatatgaactttatccttgtctcccagGTTGCATCTATCAAGCAAAGATGTTCTTCCTCCGCCTTCTATCTGGAGGGATTCTTGGGTGGCAACAAGATCTGTCATGAAAGTGAAGACGTTTCAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA