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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttggttatctcgagcgtggtttcaatggatgtctggatgtggacgatatgagtgtcacctgccccgctgtaattgttttgacgtagGAGGTGCACGAGTTCATCAAGAGGAATTTCAAGTTCCTGAACACGGATACAGTTGAGCACAATGATGGTATTCAGAAATGCATTAGGGTGCGCTTGGGTT

Basic information

species Zea mays
transcript GRMZM2G459702_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012659|gb|DT939829.1|DT939829
EST:     ATTTGTCGCCAATCATTCTGTCAGCTGATGCAGATAAGGCACATCGATCC                         GAGGTGCACGAGTTCATCAAGAGGAATTTCAAGTTCCTGAACACGGATACA
genomic: ATTTGTCGCCAATCATTCTGTCAGCTGATGCAGATAAGGCACATCGATCCgtgagtttgg ... tttgacgtagGAGGTGCACGAGTTCATCAAGAGGAATTTCAAGTTCCTGAACACGGATACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggatgtggacgatatgagtgtcacctgccccgctgtaattgttttgacgtagGAGGTGCACGAGTTCATCAAGAGGAATTTCAAGTTCCTGAACACGGATACAGTTGAGCACAATGATGGTATTCAGAAATGCATTAGGGTGCGCTTGGGTT
                                            ttttgac  putative branch site (score: 3)
                                         ttgtttt  CT-rich tract
                                      taattgtttt  TA-rich tract