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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgctaaaatatgacattcttgtggtgtctagtttctgcagtattgttagtttgttggccctgaccttatcaacattgagtgttttgtttctggtgatagGAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGG

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 3'ss of exon 2
tcgctaaaat----atgacattcttgtggtgtct-agtttctgcagtattgttagtttgttggccc--tgaccttatcaacattgagtgttttgtttctggtgatagGAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGG
  || |  ||     |||  ||  |||  | ||| || ||| |   | |  ||| ||  |||      |||  |  |      | | | ||||   |        ||||||||||| ||||||| ||||||||||| |||||||||||||||||
-tgccatgatccgtctgaagttgctgttttttcttagcttcagttatttgattatttctttgatatattgatttggttgttgataaatatttttcat------gcagGAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244484|gb|DT652398.1|DT652398
EST:     CCATCCGCCAGGACATGATCGTCGCCATCCGAAGGGCCAACGGCGCCCAG                         GAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGG
genomic: CCATCCGCCAGGACATGATCGTCGCCATCCGAAGGGCCAACGGCGCCCAGgtgagggtcg ... ctggtgatagGAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagtttgttggccctgaccttatcaacattgagtgttttgtttctggtgatagGAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGG
             ccctgac  putative branch site (score: 3)
                                     ttttgtttct  putative PPT
                                     ttttgttt  TA-rich tract