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gtgctggcaaaacctactctatatagcacttacatttccatcgattgtgcaatcgtatgcttgtgtggttaattcacacacattttttttagtgattatcatgcttttgttatctttttttacaactgtaatatgttgttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTACAGAGGATAGAAAGAAGATGCTTACTCCTACAATTCGGTTGATGGTTC
species | Zea mays |
transcript | GRMZM2G457881_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474518|gb|FK963007.1|FK963007
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211477029|gb|FK963011.1|FK963011
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474509|gb|FK962998.1|FK962998
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474519|gb|FK963008.1|FK963008
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474515|gb|FK963004.1|FK963004
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211471996|gb|FK962993.1|FK962993
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474511|gb|FK963000.1|FK963000
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474516|gb|FK963005.1|FK963005
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474507|gb|FK962996.1|FK962996
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474508|gb|FK962997.1|FK962997
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474510|gb|FK962999.1|FK962999
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474520|gb|FK963009.1|FK963009
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG GEST: gi|211474520|gb|FK963009.1|FK963009
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcag-
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG GEST: gi|149023564|gb|EE045895.2|EE045895
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcag-
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474517|gb|FK963006.1|FK963006
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474514|gb|FK963003.1|FK963003
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474521|gb|FK963010.1|FK963010
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|71322965|gb|DR798157.1|DR798157
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474512|gb|FK963001.1|FK963001
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211471998|gb|FK962995.1|FK962995
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTTEST: gi|211474513|gb|FK963002.1|FK963002
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
EST: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAG AAAGAAGAATGGAAACTACATCAGCTCGAGTGTAGAGCAATGGCAGCACTT
genomic: GGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaa ... gttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTT
tgattatcatgcttttgttatctttttttacaactgtaatatgttgttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTACAGAGGATAGAAAGAAGATGCTTACTCCTACAATTCGGTTGATGGTTC
ttttgttatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctggcaaaacctactctatatagcacttacatttccatcgattgtgcaatcgtatgcttgtgtggttaattcacacacattttttttagtgattatcatgcttttgttatctttttttacaactgtaatatgttgttagtgcagAAAGAAGAATGGAAACTACATCAGCTGGAGTGTAGAGCAATGGCAGCACTTACAGAGGATAGAAAGAAGATGCTTACTCCTACAATTCGGTTGATGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG