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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgtcttttctatgttttggttatactgttatctcctgctgttcatctcattcaatcttttaatattttccatcgctgttttcccagtcttccgatgtctatgcactaattgaattcttattaattgctgcagGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCCAGTCAATTGGACCAATGACACCCTAGGACGCATCAACGTAGTCTACAGT

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91051041|gb|EB161459.1|EB161459
EST:     AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGG                         GCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC
genomic: AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatg ... attgctgcagGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC
EST: gi|78105551|gb|DV523969.1|DV523969
EST:     AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGG                         GCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC
genomic: AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatg ... attgctgcagGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcccagtcttccgatgtctatgcactaattgaattcttattaattgctgcagGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCCAGTCAATTGGACCAATGACACCCTAGGACGCATCAACGTAGTCTACAGT
                                        tattaat  putative branch site (score: 2)
                          actaattgaattctta  TA-rich tract