Sequence
atgc intronic sequence ATGC exonic sequence...ggttatccttgctatattatctataaaacgacgcatgcattgaatactagatttaagccttgtaaattctcttgacatctgttgctttcgtatcggcaagGGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGCCATCTACTGGCGATGGGACGAGAAAGCGACAGAAGAAAGAAATGAAAAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211020060|gb|FL177486.1|FL177486EST: AGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTT GGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGC
genomic: AGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTTgtatggtctt ... tatcggcaagGGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actagatttaagccttgtaaattctcttgacatctgttgctttcgtatcggcaagGGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGCCATCTACTGGCGATGGGACGAGAAAGCGACAGAAGAAAGAAATGAAAAA
tcttgac putative branch site (score: 3)
ctttcgt putative PPT
ttgtaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttatccttgctatattatctataaaacgacgcatgcattgaatactagatttaagccttgtaaattctcttgacatctgttgctttcgtatcggcaagGGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGCCATCTACTGGCGATGGGACGAGAAAGCGACAGAAGAAAGAAATGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
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- - -tccttgc
- - - - - - - - - - - - - - - -cgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc