1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgttgatgcatgcgcgcgcgcgcgcgcactcagcaatcagcatggcatggatcgttcaaaggacatttttttttaccaaggaaatggtgtgggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG
species | Zea mays |
transcript | GRMZM2G454928_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCG GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGAEST: gi|78022296|gb|DV490683.1|DV490683
genomic: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCGgtacgggctc ... gggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
EST: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCG GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGAEST: gi|78122856|gb|DV541240.1|DV541240
genomic: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCGgtacgggctc ... gggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
EST: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCG GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGAEST: gi|148974669|gb|EE025471.2|EE025471
genomic: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCGgtacgggctc ... gggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
EST: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCG GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGAEST: gi|78109734|gb|DV528150.1|DV528150
genomic: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCGgtacgggctc ... gggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
EST: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCG GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGAEST: gi|78122857|gb|DV541241.1|DV541241
genomic: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCGgtacgggctc ... gggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
EST: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCG GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
genomic: CGTGCTCGCCGTGCTCCGAGACGATTACCGGCGCGCCTACTTCCTCACCGgtacgggctc ... gggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGA
catggatcgttcaaaggacatttttttttaccaaggaaatggtgtgggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG
atttttttttaccaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttgatgcatgcgcgcgcgcgcgcgcactcagcaatcagcatggcatggatcgttcaaaggacatttttttttaccaaggaaatggtgtgggattgcagGGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA