1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttgaacctttttttaatatattcactagttatggatatctaaaatcagcttcctgcccaatctagtcggatcttacatgacttgtttcacttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA
species | Zea mays |
transcript | GRMZM2G452633_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAAT AAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCEST: gi|71445775|gb|DR826825.1|DR826825
genomic: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAATgtaagcagtt ... cttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
EST: AGGCACCCATTGTCCAGGAGTCCCCTGGTGACTCTGGTGTCGGCAGTAAT AAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCEST: gi|71445776|gb|DR826826.1|DR826826
genomic: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAATgtaagcagtt ... cttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
EST: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAAT AAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCEST: gi|78089215|gb|DV517591.1|DV517591
genomic: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAATgtaagcagtt ... cttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
EST: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAAT AAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
genomic: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAATgtaagcagtt ... cttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
tcagcttcctgcccaatctagtcggatcttacatgacttgtttcacttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA
atcttac putative branch site (score: 136)
cttgtttcactttt putative PPT
acttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaacctttttttaatatattcactagttatggatatctaaaatcagcttcctgcccaatctagtcggatcttacatgacttgtttcacttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA
- - - - - - - - - - - - - - - - - - - - -aaaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca