Sequence
atgc intronic sequence ATGC exonic sequence...atttatgttgatttttgaatctttagtcataaatatatctcgcctaggcttgttgttattatgtcacagcagtgatctgattgcaatgccttttttctagGGGGCATTGTAAACGATTCCCTACGTCCTCAAATTCCTTCATGGTGTGATCCTGAGTGGAAGGGGTTGATGGAAAGTTGTTGGTCCAGTGATCCAGCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G450602_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g54510.3 (Oryza sativa), 3'ss of exon 8
-----atttatgttgatttttgaatctttagtcata--aatatatctcgcctaggcttgttgttattatgtcacagcagtgatctgattgcaatgccttttttctagGGGGCATTGTAAACGATTCCCTACGTCCTCAAATTCCTTCATGGTGTGATCCTGAGTGGAAGGGGTTGATGGAAAGTTGTTGGTCCAGTGATCCAGCTGA
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gagggactgcttatatatatccagacgctagtgatgctattgtaattgatcaactattcttgtt----tgtcactaaagtgatc-acttatcata--tttattccagGGGGCATCGTGAACAATTCCCTACGTCCTCAGATCCCCTCATGGTGTGATCCTGAATGGAAATCACTGATGGAAAACTGTTGGGCCAGTGAACCAGCAGA
upper sequence: GRMZM2G450602_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G01190.1 (Glycine max), 3'ss of exon 10
atttatgttgatttttgaatcttta---gtcataaatatatctcgcctaggcttgttgttattatgtcacagcagtgatctgattgcaatgccttttttctagGGGGCATTGTAAACGATTCCCTACGTCCTCAAATTCCTTCATGGTGTGATCCTGAGTGGAAGGGGTTGATGGAAAGTTGTTGGTCCAGTGATCCAGCTGA
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atctttgggcatatgtggctccaaatgcgttctgaatat-tctggtactcagaagaacaggctatatattaatattcacc--attgtcgtactttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCAGTAGA
upper sequence: GRMZM2G450602_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 8
atttatgttgatttttgaatctttagtcataaatatatctcgcctaggcttgttgtta--ttatgtcacagcagtgatctgattgcaatgccttttttctagGGGGCATTGTAAACGATTCCCTACGTCCTCAAATTCCTTCATGGTGTGATCCTGAGTGGAAGGGGTTGATGGAAAGTTGTTGGTCCAGTGATCCAGCTGA
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----gtaactacacctgtcttgcttatcttttgtatgtat-acctgtgaatgatatagagttatggtactaagacatgtagattg--atgtttctatgacagGAGGTATAGTGAACAACGCATTGCGTCCAAAAATCCCACAGTGGTGTGATCCAGAGTGGAAGGGATTGATGGAAAGTTGCTGGACGTCTGAGCCAACAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggcttgttgttattatgtcacagcagtgatctgattgcaatgccttttttctagGGGGCATTGTAAACGATTCCCTACGTCCTCAAATTCCTTCATGGTGTGATCCTGAGTGGAAGGGGTTGATGGAAAGTTGTTGGTCCAGTGATCCAGCTGA
atctgat putative branch site (score: 4)
tgccttttttct putative PPT
ttgttattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttatgttgatttttgaatctttagtcataaatatatctcgcctaggcttgttgttattatgtcacagcagtgatctgattgcaatgccttttttctagGGGGCATTGTAAACGATTCCCTACGTCCTCAAATTCCTTCATGGTGTGATCCTGAGTGGAAGGGGTTGATGGAAAGTTGTTGGTCCAGTGATCCAGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc