1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgcgttggtttctcagagttttcgttatccgtctgtgctgtggatttcgtacttgactctcgtacatgggcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCCGGCGAGACCGGGGAGATGGAGGAGCCAGTCCCAGGAGATGTCCAGATCT
species | Zea mays |
transcript | GRMZM2G450055_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCTCTCTGACNNAGATCCGCA-GTCGCCTGCCGATTATCTTCCCTTTG T-CGAGACGGCTGCGTCCGAAGTTCTCGCAAGCCTCCGTTCGAAAGTCGCEST: gi|91876627|gb|EB406584.1|EB406584
genomic: GAGCTCTCTGACA-AGATCCGCAAGTCGCCTGCCGATTATCTTCC-TTTGgtgcgttggt ... gcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGC
EST: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTG TTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCCEST: gi|149014583|gb|EE044230.2|EE044230
genomic: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTGgtgcgttggt ... gcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCC
EST: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTG TTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCCEST: gi|78112949|gb|DV531343.1|DV531343
genomic: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTGgtgcgttggt ... gcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCC
EST: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTG TTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCCEST: gi|149081132|gb|EE170239.2|EE170239
genomic: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTGgtgcgttggt ... gcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCC
EST: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTG TTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCC
genomic: CCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCCGATTATCTTCCTTTGgtgcgttggt ... gcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCC
ttatccgtctgtgctgtggatttcgtacttgactctcgtacatgggcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCCGGCGAGACCGGGGAGATGGAGGAGCCAGTCCCAGGAGATGTCCAGATCT
acttgac putative branch site (score: 7)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttggtttctcagagttttcgttatccgtctgtgctgtggatttcgtacttgactctcgtacatgggcctatgtagTTCGAGACGGCTGCGTCCGAGGTTCTCGCAAGCCTCCGTTCGAAAGTCGCCGGCGAGACCGGGGAGATGGAGGAGCCAGTCCCAGGAGATGTCCAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG