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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttctgttcttatgagctatgcgacccctgtggtatggtacatcgtattgcttgtctgctcaatattgtattgtttctgctgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCTCCTGAACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGT

Basic information

species Zea mays
transcript GRMZM2G448715_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211023196|gb|FK976150.1|FK976150
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAWTTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|24462488|gb|BM660019.1|BM660019
EST:     GTAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|91048315|gb|EB158733.1|EB158733
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|33770808|gb|CF273102.1|CF273102
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGTCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|211223444|gb|FL382580.1|FL382580
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|28188216|gb|CB179826.1|CB179826
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTNGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|76931490|gb|DV172743.1|DV172743
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|211023197|gb|FK976151.1|FK976151
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|211046010|gb|FL422511.1|FL422511
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|211023203|gb|FK976157.1|FK976157
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|37621984|gb|CF675037.1|CF675037
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|211025647|gb|FK976165.1|FK976165
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|211219781|gb|FL407453.1|FL407453
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTTCGCCGCTCCC
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTT-CGCCGCTCCC
EST: gi|89251197|gb|DY622983.1|DY622983
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
EST: gi|37621886|gb|CF674939.1|CF674939
EST:     GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCT                         AACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT
genomic: GCAAGGCTGGCGGGCAATCCAACTTTGGCGGTGGCGCGTTTTATATGCCTgtgagttgtt ... tgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtacatcgtattgcttgtctgctcaatattgtattgtttctgctgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCTCCTGAACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGT
                                      tttctgct  CT-rich tract
                          aatattgtattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttgttctgttcttatgagctatgcgacccctgtggtatggtacatcgtattgcttgtctgctcaatattgtattgtttctgctgaaatgtagAACCCCCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCTCCTGAACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA