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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgcccctgtctgagagggcttccgagcgttcccccactttcgtttcggcgaaattcgtcgcatttccgttccttccgctgatcaaatgccttcgttcccagtggttcttgtagAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG

Basic information

species Zea mays
transcript GRMZM2G447433_T08
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211181950|gb|FL254913.1|FL254913
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTG                         AGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGA
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgc ... gttcttgtagAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGA
EST: gi|71439499|gb|DR820549.1|DR820549
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGTGGTTCTTGTAG              
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGA--T---T-TGG-----GT-Ggtaagtgtgc ...
EST: gi|78114830|gb|DV533218.1|DV533218
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGTGGTTCTTGTAG              
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGA--T---T-TGG-----GT-Ggtaagtgtgc ...
EST: gi|101397320|gb|EB820583.1|EB820583
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGTGGTTCTTGTAG              
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGA--T---T-TGG-----GT-Ggtaagtgtgc ...


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcatttccgttccttccgctgatcaaatgccttcgttcccagtggttcttgtagAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG
                 cgctgat  putative branch site (score: 4)
                                              ttcttgt  putative PPT
                      atcaaat  TA-rich tract