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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgcccctgtctgagagggcttccgagcgttcccccactttcgtttcggcgaaattcgtcgcatttccgttccttccgctgatcaaatgccttcgttcccagTGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG

Basic information

species Zea mays
transcript GRMZM2G447433_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211084080|gb|FL012582.1|FL012582
EST:     ACCACTTCGCTCAGCTGCTCGCAACGGCGGCTTGTACCCTGATTTGTGTG                         TGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAACGCA
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgc ... tcgttcccagTGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCA
EST: gi|211481710|gb|FL151171.1|FL151171
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTG                         TGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCA
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgc ... tcgttcccagTGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCA
EST: gi|211096673|gb|FL010334.1|FL010334
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTG                         TGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGT
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgc ... tcgttcccagTGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGT
EST: gi|211084084|gb|FL012586.1|FL012586
EST:     ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTSGGTG                         TGGTTCTTGTAGAGCGGTCGTGTCGTCCGA
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgc ... tcgttcccagTGGTTCTTGTAGAGCGGTCGTGTCGTCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgaaattcgtcgcatttccgttccttccgctgatcaaatgccttcgttcccagTGGTTCTTGTAGAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG
                             cgctgat  putative branch site (score: 4)
                                          ccttcgttccc  putative PPT
                                  atcaaat  TA-rich tract