Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC

Basic information

species Zea mays
transcript GRMZM2G446960_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g73160.1 (Oryza sativa), 3'ss of exon 2
agacattatacgc-attagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
| |  || ||    ||| |  || |   |  |     |     |  |    ||||  |||    |||    |  ||  ||  |  || |  |||  ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
acatgttttatttgattggtcatgtatttgctgaaggcctgaatgatggtacctttatttgttatgagttgaagtgctaatttaattcaactata-tgcagAGGGAGTCTTGTATGCCAAGAAGGACTACAACCTGGCCAAGCACCCAAAGGTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G02070.1 (Glycine max), 3'ss of exon 2
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
               |||     || | |||   |  |      |||    || |||  ||  ||||  | ||  |     | | | | |   ||||||||||| || |  |  || |||||||||| |||  |||| ||||||||  || |||| ||||| ||  || ||||||||||||| |||||||| ||||||||
--------------gtaggtgccttagaatttcattgg-----ggttacgtctcgttgaagaatgaatct-taccttcttttttcttaatgtcggtgcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G02410.3 (Glycine max), 3'ss of exon 2
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC--------------------
            | ||||   ||    | || | | |     |  ||||   |||| |||   |       | |||     ||||| | |       ||||||| || |  |  || |||||||||| ||| ||||| ||||||||  || |||||||||| ||  || ||||||| ||||| |||||||||||||| ||                    
---------gtccgttagt--taacattgttgtctcctcttgtgctttacagttgtgttaaaattgtaaggtgtgtg----tgtttgatt-------cagagggagtttgctttgcgaagAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGA

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G02410.2 (Glycine max), 3'ss of exon 2
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
            | ||||   ||    | || | | |     |  ||||   |||| |||   |       | |||     ||||| | |       ||||||| || |  |  || |||||||||| ||| ||||| ||||||||  || |||||||||| ||  || ||||||| ||||| |||||||||||||| ||
---------gtccgttagt--taacattgttgtctcctcttgtgctttacagttgtgttaaaattgtaaggtgtgtg----tgtttgatt-------cagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G37470.1 (Glycine max), 3'ss of exon 2
agacattatacgcattagcaatattcgt--attatgtacgaccct---agtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
      ||   || |||||| |  ||    || || | ||  | |    |||    || |||  |   ||||  | ||  |     || |    ||||||||||||||| || |  | ||| |||||||||| |||  |||||||||||||  || | || ||||| ||  || ||||||||||||| |||||||| ||||||||
-----gtaggtgccttagcatttatcacgaatcatcttcgttcgttagggttacgtctcgttgaacaatgaatct-tacctttcgttggt--gtttatggtgcagAGGGAGTTTGCTTCGCGAAGAAGGACTTCAATTTGGCCAAGCACCCTGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G43110.1 (Glycine max), 3'ss of exon 2
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaac-tgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
                          ||    |     | | | || |   |||||  |   ||   | | | | ||||   |        | || | ||||||| || |  |  || |||||||||| ||| ||||| ||||||||  || |||||||||| ||  || ||||||| ||||| |||||||||||||| ||
--------------------------gt-ccgttagttaacattgtctcctcttgtgct---ttacggttgtgtttaaattgtaacgtgtgtttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G25740.2 (Arabidopsis thaliana), 3'ss of exon 2
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtt-taacttatgg-----tgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
      ||||    ||       ||  |||   ||||    ||   || || | |    ||  |    ||  ||   |||   |  || ||||  |      | |||||| || |  |  || |||||||| | ||| ||  | ||||| ||   | ||||||| || ||| || | |||||||||||||||||||| ||||||||
-----atataactgttgagggatttattatctagtactgtactcagttgtc-tagagaaagaatttgtgtggatactaaatgatcatatcttactgggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCTCATGCAGAGTTTCAAGTC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: EDP00807 (Chlamydomonas reinhardtii), 3'ss of exon 1
---------------------------------------------------------agacattatacgcattagcaatattcg---tattatgtacgaccctagtttatccttgttttaggttga--------aggtata--tgtaaaactgt-ttaacttatggtgc----agAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAG---CTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
                                                          |||      |  |    |  |  |||    |     | || | |  | ||      |    |  || |        | ||||   |  | | |||| ||  ||  | ||||    |||||| ||| |  | ||  ||||||||| ||||||     |||||||  ||   |  |  ||||||||| || |||| |||||||||||||||||||||||   
gtgagcatcagttggtatgcgacctcggtgttcgcgttctttgaggcccggggacatggacgccgggcctagcgacgcttgtcggcgcacagcctgcggcgcgcgctttcttcggccgcaaatttatttccccaatgtatgcttacacacctgtatttgctcgttgtgcgcgcagAGGGTGTCCTTCAGGCGGAGAAGGACTTCAACCTCAAGGAGCACCCGGAGATCCCCGGCGTGCCCAACCTGCAGGTCATTAAGCTCATGCAGAGCTTCAA---

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ29946 (Selaginella moellendorffii), 3'ss of exon 1
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
              | ||      | |  |    |    | || |      |   |||    |   || | | |    || ||||        || |||||||| ||| | |||||||||||||||||||| ||  ||||||||||  || | ||||| |||||  |  ||||||| |||||||||||||||||||||||
-------------gtgaggggatctagcttctcctggcgcgctcgcgctcacgcatttctaatccgagatttctccccaattgttc-------ggcgcagAGGGCGTCCTCTACGCCAAGAAGGACTACAATCTCCCCAAGCACCCGGAGATCGATGTCCCCAATCTCCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC

upper sequence: GRMZM2G446960_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ25099 (Selaginella moellendorffii), 3'ss of exon 1
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
                     |    | ||   |  ||  |  | ||   |||| |||    |   || | | |    || ||||        || |||||||| ||| | |||||||||||||||||||| ||  ||||||||||  || | ||||| |||||  |  ||||||| |||||||||||||||||||||||
--------------------gtgaggggatctagctcg--cgcatttctcccttttttctaatccgagatttctccccaattgttc-------ggcgcagAGGGCGTCCTCTACGCCAAGAAGGACTACAATCTCCCCAAGCACCCGGAGATCGATGTCCCCAATCTCCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211459396|gb|FL082784.1|FL082784
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|71440182|gb|DR821232.1|DR821232
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459404|gb|FL082792.1|FL082792
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|15499458|gb|BI595971.1|BI595971
EST:     ATCATCT-CAAG-AGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|37397301|gb|CF635946.1|CF635946
EST:     AGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: AGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|78084267|gb|DV512660.1|DV512660
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211351550|gb|FL082748.1|FL082748
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211351551|gb|FL082749.1|FL082749
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353957|gb|FL082763.1|FL082763
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|29130904|gb|CB381608.1|CB381608
EST:     CGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: CGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|71327344|gb|DR800282.1|DR800282
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|33101161|gb|CF061121.1|CF061121
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356347|gb|FL082769.1|FL082769
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|101393392|gb|EB818627.1|EB818627
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|71763591|gb|DR961528.1|DR961528
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356352|gb|FL082774.1|FL082774
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353958|gb|FL082764.1|FL082764
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211351553|gb|FL082751.1|FL082751
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|76919621|gb|DV167805.1|DV167805
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356358|gb|FL082780.1|FL082780
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|74235891|gb|DT643805.1|DT643805
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|74235890|gb|DT643804.1|DT643804
EST:     GAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: GAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|78105937|gb|DV524355.1|DV524355
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353956|gb|FL082762.1|FL082762
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356349|gb|FL082771.1|FL082771
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|71449328|gb|DR830378.1|DR830378
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|60396230|gb|DN229099.1|DN229099
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356345|gb|FL082767.1|FL082767
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353950|gb|FL082756.1|FL082756
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|31405660|gb|CD484392.1|CD484392
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|71332585|gb|DR803267.1|DR803267
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|33467936|gb|CF244985.1|CF244985
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211461925|gb|FL082802.1|FL082802
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|116817760|gb|EC860670.1|EC860670
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353959|gb|FL082765.1|FL082765
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTGTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCTAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459394|gb|FL082782.1|FL082782
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353952|gb|FL082758.1|FL082758
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|86470253|gb|DY236623.1|DY236623
EST:     AAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: AAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353949|gb|FL082755.1|FL082755
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353955|gb|FL082761.1|FL082761
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|60354161|gb|DN221134.1|DN221134
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|27522095|gb|CA989201.1|CA989201
EST:     GCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: GCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211461922|gb|FL082799.1|FL082799
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGRCACCCCAAG
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAG-CACCCCAAG
EST: gi|211459407|gb|FL082795.1|FL082795
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353946|gb|FL082752.1|FL082752
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|15499445|gb|BI595958.1|BI595958
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|67023433|gb|CO452182.1|CO452182
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCC-TG                         AGGGGGTCTTGTGCGCCAAGAA-GACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459399|gb|FL082787.1|FL082787
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356354|gb|FL082776.1|FL082776
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459403|gb|FL082791.1|FL082791
EST:     ATCATCTCCAAGAAGAACCGCCGCGAKATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|28931249|gb|CB334610.1|CB334610
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211461928|gb|FL082805.1|FL082805
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|61118694|gb|DN559655.1|DN559655
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459402|gb|FL082790.1|FL082790
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459395|gb|FL082783.1|FL082783
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356346|gb|FL082768.1|FL082768
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459398|gb|FL082786.1|FL082786
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|32913276|gb|CF018088.1|CF018088
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211459406|gb|FL082794.1|FL082794
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|71327347|gb|DR800283.1|DR800283
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|74245943|gb|DT653857.1|DT653857
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCGAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211403729|gb|FL082320.1|FL082320
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|28910083|gb|CB331252.1|CB331252
EST:     GATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAG
genomic: GATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagA-GGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAG
EST: gi|211459397|gb|FL082785.1|FL082785
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356353|gb|FL082775.1|FL082775
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|87156968|gb|DY401757.1|DY401757
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211461923|gb|FL082800.1|FL082800
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|22521236|gb|BU080047.1|BU080047
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|86470252|gb|DY236622.1|DY236622
EST:     CAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: CAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356348|gb|FL082770.1|FL082770
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211353954|gb|FL082760.1|FL082760
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
EST: gi|211356357|gb|FL082779.1|FL082779
EST:     ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG                         AGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC
genomic: ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 179

ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 95

ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 79

ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 80

ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATGgtgagctctg ... tatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC
                                     gtttaac  putative branch site (score: 80)
                        tatatgtaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agacattatacgcattagcaatattcgtattatgtacgaccctagtttatccttgttttaggttgaaggtatatgtaaaactgtttaacttatggtgcagAGGGGGTCTTGTACGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttt